KEGG   Salvelinus namaycush (lake trout): 120052493
Entry
120052493         CDS       T07522                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03250  Viral life cycle - HIV-1
snh03272  Virion - Hepatitis viruses
snh04144  Endocytosis
snh04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120052493
   03272 Virion - Hepatitis viruses
    120052493
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120052493
  09143 Cell growth and death
   04217 Necroptosis
    120052493
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:snh04131]
    120052493
   03400 DNA repair and recombination proteins [BR:snh03400]
    120052493
Membrane trafficking [BR:snh04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    120052493
DNA repair and recombination proteins [BR:snh03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    120052493
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 RuvB_N AAA_22 IstB_IS21 DUF815 AAA_18 AAA_2 NPHP3_N nSTAND3 RNA_helicase AAA_33 AAA_17 PhoH AAA_24 Mg_chelatase nSTAND_NTPase5 Csx12 AAA_7 Parvo_NS1 AAA_28 ResIII NACHT bpMoxR TEBP_OB2-like Sigma54_activat MCM
Other DBs
NCBI-GeneID: 120052493
NCBI-ProteinID: XP_038855365
UniProt: A0A8U0UJM1
LinkDB
Position
8:19924737..19930115
AA seq 438 aa
MANNNLQKAIDLASKAAEEDKAKNYEEALRLYQHSIQYFLHVVKYEAQGDKAKQSIRAKC
AEYLDRAEKLKEYLKKKDKAPPAKPVKESGSDDKGNDSDEGEGDPEKKKFKNQLSGAIVM
EKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA
VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLARENRPSIIFIDEIDSLCGSRSEN
ESEAARRIKTEFLVQMQGVGNDNEGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEGHAR
SFMFKLHLGSTPNELTESDYVTLGKKTEGYSGADISVIVRDALMQPVRKVQSATHFKRVQ
GSSWNHPNLVVDDLLTPCSPGDPDAIEMTWMDVNGEKLMEPIVCMADMLRSLHNTKPTVN
EQDLDKLKKFTEDFGQEG
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggctaataacaatttacagaaagcaatagatcttgcaagcaaggctgcagaggaggat
aaggctaaaaactacgaggaagctctccggttgtaccagcattccattcaatacttcctt
catgttgttaaatatgaggcccagggagacaaggccaagcagagcatcagggcaaagtgt
gcagagtacctggaccgagcagagaagctgaaggaatacttgaagaagaaggataaggcc
cctccagccaagcctgtcaaggagtccggctctgatgacaaagggaatgacagtgatgaa
ggtgaaggtgacccagagaaaaagaagtttaaaaatcaactctcaggggccatcgtcatg
gaaaagccaaacatcaagtggaatgatgtagctgggcttgagggtgcaaaggaggccctt
aaagaagctgtcatcttgcccatcaaattccctcacctcttcaccggaaagcgaactcca
tggagagggatcctgctgtttggccctcctggtacagggaagtcttatctggccaaggct
gtggccacagaagccaacaactctaccttcttctctatctcctcctctgacctggtgtcc
aagtggctgggggagagtgaaaagttggtgaagaacctgtttagcctggccagggagaac
aggccctccatcatcttcatcgacgagatagactctctgtgtggctccaggagtgagaac
gagagtgaagcagcccgccgcatcaagactgagttcctggtccagatgcagggtgttgga
aatgataatgagggagtcctggttctaggagccacaaacatcccctggacactggactct
gctattaggagaaggtttgagaagcggatctacatccctctgcctgaggggcacgcccgc
tccttcatgttcaagctgcatctgggctccacccccaatgagctcactgaatcagactat
gtgaccctgggtaagaagacggaaggctactctggagcagacatcagcgtcatcgtaagg
gacgccctcatgcagccagtcaggaaggtgcagtcggccactcacttcaaacgggtccaa
gggtcatcatggaaccatcccaacctcgtggtagacgatctcttgaccccatgctcacca
ggagatccagacgccatagagatgacctggatggatgttaatggggagaaactcatggag
cccattgtttgcatggctgatatgctgaggtcactgcacaacaccaagccaactgtgaac
gagcaggacttggacaaactcaagaagttcacagaggactttggtcaggaaggctaa

DBGET integrated database retrieval system