Salvelinus namaycush (lake trout): 120052530
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Entry
120052530 CDS
T07522
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120052530
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120052530
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120052530
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120052530
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF2716
Motif
Other DBs
NCBI-GeneID:
120052530
NCBI-ProteinID:
XP_038855463
UniProt:
A0A8U0R438
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Position
Sna1:complement(16904309..16942590)
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AA seq
471 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRILNERQQQTCEAEALAR
VYSSSLTNGLSTLNHEIGGTYANGHVIELPKGQVNGGATGGYYHGMDSTQPSPDQSGLDL
AGIKHIKQEPVYDLTPVANLFNYSTYQDSQLAHSNVSMGELDRIAQNIIKSHLETCQYTA
DELQQLAWQTHSYDDIKMYQSKTRDVLWQQCAIQITHSIQYVVEFAKRISGFMELCQNDQ
ILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGCDDLVNAVFDFAKSLCS
LQLTEEEIALFSAAVLISTDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDALAKLIG
RIPMLSAVCTLHTEELQAFQQLHPETVNVLFPPLYKELFNPDPNAAITMPK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcccaaatcgaagttataccgtgcaaaatctgtggagacaagtcatcaggaatc
cactatggagtcatcacgtgtgagggctgcaaagggttcttcagacgaagtcagcagaac
aatgctgcatactcatgccctcgccagaggaactgtctgatcgacaggacaaaccgaaac
cgctgccagcactgccgcttacagaagtgtcttgcacttggaatgtccagagatgcggtg
aagtttggccgcatgtccaagaagcagcgtgacagcctgtacgccgaggtacagaagcac
cagcagcggatcctgaatgagcggcagcagcagacgtgtgaggcagaggccctggcgcgc
gtctactcctccagcctgaccaatggcctcagcaccctcaaccacgagatcggaggcacc
tacgccaacggccacgtcatcgagctccccaagggccaggtgaacggtggtgccacaggt
ggctactaccatggtatggactccacccagccctccccggaccagtcgggcctggacttg
gcgggcataaagcacatcaagcaggagccggtgtacgacctgacccctgtggctaacctg
ttcaactatagcacctaccaggacagtcagctggcgcacagcaatgtcagcatgggagag
ctagatcgtatcgcccagaacattataaagtctcacctggagacctgtcagtacacagca
gatgagctgcagcagctggcctggcaaacacactcctacgatgacatcaagatgtaccag
agcaaaacgcgagacgtgttgtggcagcagtgtgccatccagatcacccattccatccag
tatgtggtggagtttgccaagcgcatctcaggcttcatggagctttgccagaacgaccag
atcctcctgctcaagtcaggttgtctggaggtggtcctggttagaatgtgtcgggcgttt
aaccctctcaacaacacagtgctgtttgaggggaagtacgggggcatgcagatgttcaaa
gcactaggctgtgatgacctggtcaacgctgtgtttgactttgccaagagtctgtgctct
ctgcagctcactgaggaggagatcgctctgttctccgcagcagtgctcatctccacagac
cgtccatggctgatggaacccaggaaggtgcaaaagctccaggagaagatctactttgcg
ctgcagcacatcatgcagaagaaccacatggacgaggacgcgctggctaagctgattggt
cggatacccatgctgtcggccgtgtgtactctccacaccgaggagctgcaggccttccag
cagcttcaccccgagacggtgaacgtgctcttccccccgctctacaaggagctgttcaat
cccgaccccaatgcagcgatcaccatgcccaagtga
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