Salvelinus namaycush (lake trout): 120052582
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Entry
120052582 CDS
T07522
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04144
Endocytosis
snh04510
Focal adhesion
snh04540
Gap junction
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120052582 (pdgfra)
04020 Calcium signaling pathway
120052582 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120052582 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
120052582 (pdgfra)
04540 Gap junction
120052582 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
120052582 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
snh01001
]
120052582 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
snh04090
]
120052582 (pdgfra)
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
120052582 (pdgfra)
Protein kinases [BR:
snh01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
120052582 (pdgfra)
CD molecules [BR:
snh04090
]
Proteins
120052582 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Shr-like_HID
Kinase-like
Motif
Other DBs
NCBI-GeneID:
120052582
NCBI-ProteinID:
XP_038855505
UniProt:
A0A8U0R587
LinkDB
All DBs
Position
Sna8:28002390..28024347
Genome browser
AA seq
1466 aa
AA seq
DB search
MDEMKTCLIIGVVLFGLLSVTCGLMPPTIVSTEDEFVLEPLSVFNISCTSKRTVAWVEPL
PVNTFVLPGYYTATLFIYNASVTHTGYYTCIYQDKEGDEEYDEDNEAVIYVFVPDPKVPF
VPEEPGSMVVLVYPGETIIPCRVSDPHSPVVLKSAPSGVEMDAAYDNKIGFIGNLGAGLY
VCETTVNGVTTTSDIYTVKDNKQMEDFHVEVKASEEAVRLGKPFNITCVAPPGLPYQQQW
LHPRKQAVDAVQMKQTLPDRVVYTLSIPAASSQDSGVYECSITNNFNGEIRANMVAVTVF
EENSFVMLDHSGIGAVEFVSMMEETEFTISIEAFPAPKVTWLKDGITITENSYFLTKTRR
LVGNHYQSTLTLRQSLEKDSGNYTIIVLSSAYTDQFSFTLKVKESGAVLFQPASAPVLFP
QREEWIVPLHTPFTLTCRGEAELAWDTPIYLSEQTEEDNSGLFITTVTVENATAGHTGFY
ICFYKGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPYGNHVLNGHDEMEIQCRVSDPGANV
TLVNADTQQAVPMAVYDSRRGAVGFFSAGTYVCKALVNGEEHLSEEYIVHGWAGGSELRV
ELKAQKTALLVGDTITVICVARGSEILEDHWKYPGKLAARGLKSVRENKRDQEIQYTLTV
PQASAKDSGIYVCSITDIISNENQTKKLAITVYERPFVSLRPAFSSQESADLDEVRQFQA
DIDSFPSAQVTWLKDGLPLNDVAAEITTSLRQVSETRYQSVLTLIRAKEEDSGNYTIRVQ
NGNQTHSHNFSLQVKVPAVIVDLKDLHHGSATGQSVVCIAGGMPTPKVEWFICMNIKHCA
NDSSQWVPLPTNNTEITVEAHMDQDKQLESRVIFGHLENTLAVRCLARNEMAAVSREVKL
VSQDPHSELTVAAAALVLLVFVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFSRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFISV
HPEKTKKDLDIFGINPADESSRSYVILSFESGKGDYMDMKQADTTQYVPMLEMSDASKYS
DIQRSEYNHPPSQKGDSEMDNMLSGDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDL
AARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVW
SYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPADVYEMMMKCWNSEPEK
RPSFFSLSESVASLLPSGYKRCFERVNHEFLKSDHPAVTRVQVENDDTYVGITYKNQGKS
KDRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYCKRNRHSSQTSEESAIETGSSSTLAKR
EGETLEDITLLDEMCLDSELVEDSFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgaagacatgtctcatcattggggtggtcttgtttgggttgttatcagtt
acctgcggactgatgccaccgaccattgtatcaactgaagatgagtttgttctcgagcca
ctctccgtgttcaacatcagctgcactagtaaaaggaccgttgcttgggtcgagccctta
cccgtcaacacatttgttttgcctggatattacacggccacgctcttcatctataacgct
tccgtgacacacaccggatattacacctgcatataccaagacaaagagggcgatgaagag
tatgatgaagacaatgaggcagtcatatacgtttttgtcccagatcccaaagttccgttc
gtgcctgaggagccaggtagcatggtagttctagtctatcctggtgaaaccatcatccca
tgcagggtgtcagaccctcactccccggtggtcctgaagagtgctcccagtggagtagag
atggacgctgcttatgacaacaagatcggcttcattggcaacctgggcgctggactctac
gtctgtgagaccaccgtgaacggcgtgacaacgaccagtgacatctacaccgtgaaggac
aacaaacagatggaggacttccatgtggaggtgaaggccagcgaggaggcagtgagactg
gggaaacccttcaacataacctgtgtggcacctccaggactgccctaccagcagcagtgg
cttcaccccaggaaacaggctgtggatgcagtccagatgaagcagactctgcctgataga
gtggtctacactctcagtatcccagcagcctcctctcaggacagtggggtgtatgagtgc
tctatcaccaacaacttcaatggagagatcagagccaacatggtggctgtcactgtcttc
gaggagaactcctttgtgatgttggaccacagtgggatcggagcggtggagtttgtcagt
atgatggaggagacagagttcaccatcagtattgaagccttccctgctcctaaagtcacc
tggctgaaagacggtatcaccatcactgagaacagctacttcctcaccaagaccagacgt
ctggtgggcaaccactatcagagcactctgactcttcggcagtcactagagaaggacagt
gggaattacaccatcatagtcctcagcagcgcttacactgaccagttctccttcaccctc
aaagtgaaagaatcaggggcagtactgttccagccagcctcagcgccagtgctgttcccc
cagagagaggagtggattgttcccctccacacccccttcaccctgacctgcagaggcgag
gcagagctggcctgggacacgcccatctacctatcagagcagaccgaggaggacaacagc
ggcctgttcatcaccacggttaccgtagagaacgcgacagcagggcacactggcttctac
atctgcttctacaaaggagggaactccactgaggagggagaggacagcagcatctacata
tatgtgccagatccagaggtgcccttcgtaccctcgctggtgccctatggcaaccacgtc
ctgaatggtcacgatgagatggagatccagtgccgcgtgtcggaccccggtgccaatgtg
accctggtcaacgctgatacccagcaggccgtgcccatggcggtctacgacagcaggagg
ggtgccgtgggcttcttcagcgcaggaacctacgtctgtaaggccctcgtcaacggagag
gagcacctcagtgaggagtacattgtccacggctgggcaggggggtcggagctgcgtgtg
gagctgaaggcccagaagacagccctcttggtgggagacaccatcactgtcatttgtgtg
gcccgggggtctgagatactggaagaccactggaagtaccctggaaaactggcggcccgg
ggcttgaagtcggtgcgtgagaataagagggaccaggagatccagtacacattgactgtc
ccccaggcctcagccaaagacagcggcatctatgtctgctccatcactgacatcatcagc
aacgagaaccagaccaagaagctggccatcactgtctatgaaaggccattcgtgtcgcta
cgcccggcgttcagttcacaggagtcagcagatttggatgaggtcagacagttccaggct
gacattgactcctttcccagcgctcaggtcacatggctcaaagatggcctccctctcaac
gacgtggcagctgagataacgaccagcctccggcaggtcagcgagaccaggtaccagagt
gttctgaccctgattcgggccaaagaggaggacagtgggaactacaccatcagagtgcag
aacgggaaccagacccacagccacaacttcagcctgcaggtcaaagtgcctgcagtcatt
gtggacctgaaggacctccaccatggctcagccacaggccagtctgtagtgtgtatcgct
ggaggcatgcccactcctaaggtggagtggttcatctgcatgaacatcaaacactgtgcc
aacgactcgtctcagtgggtgcccctgcctaccaacaacacagagatcactgtggaagcg
cacatggaccaggacaaacagctggagagtcgggtgatctttgggcatctggagaacacc
ttggccgttcgctgcctggccaggaacgagatggccgccgtcagcagggaggtcaaactg
gtgtcacaagaccctcactcagagctgactgtagctgctgctgccctggtgctgctggtc
tttgtcatcatctcactcattgttctggtcattatctggaaacagaagcctcgctatgag
atccgttggagggtgatagagtcagtgagccctgatggccatgagtacatctacgtggac
cccatgcagctaccctatgactccagatgggagttctctcgcgatgggctcgtactggga
cgtatcctgggctctggggcgtttgggaaggtggtggagggaactgcatacggactcagc
cgctcccagcctgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagt
gagaaacaggccctgatgtcagagctgaagatcatgactcacctgggccctcacctcaac
atcgtcaacctgcttggggcctgtaccaagtcaggccccacctacatcatcactgagtac
tgcttctatggagaccttgtcaactacctgcacaagaacagagaaaacttcatcagcgtg
cacccagagaagaccaagaaagacctggacatctttggcatcaaccctgcagacgagagc
agcaggagctatgtgatcctgtcctttgagagtggtaaaggggactacatggacatgaag
caggcagacaccacgcagtatgtgcccatgctggagatgagtgatgcctccaagtactcc
gacatccagaggtccgaatacaaccacccgccatcacagaagggtgatagtgagatggac
aacatgctgtcaggggatggtaacgagggcctcagcaccacagacctgctcagcttcacc
taccaggtggccagaggcatggagttcctatcctctaagaactgtgtgcatcgggacctg
gctgccaggaatgtcctgctctctcaggggaagatagtaaagatctgtgactttggcctg
gccagagacatcatgcacgacaacaactacgtctccaaaggcagcaccttcctgccagtg
aagtggatggctcctgagagtatctttgacaacatgtacaccaccctaagtgacgtctgg
tcctacggcatcctcctctgggagatcttctctctaggtggcaccccatacccagggatg
gtagtggactccagcttctacaacaagatcaagagtggctacaggatggccaaacctgag
cacgcccccgctgatgtgtatgagatgatgatgaagtgttggaatagtgagcctgagaag
aggccttccttcttcagcctgagtgagagcgtggcctcactgctgccttccggctacaag
aggtgtttcgagagggtgaaccatgagttcctgaagagtgaccacccggcagttaccagg
gtccaggtggagaatgacgacacctacgttgggatcacctataagaaccagggcaagtcg
aaagacagggagagtggcttcgacgagcagcgcctcagctctgacagtggttacatcatc
cccctccctgacctggaccccctgtctgatgacgagtactgcaagaggaatcgccacagc
tctcagacgtctgaggagagtgccatagagacgggctccagctccacgctggccaagaga
gaaggagagaccctggaggacatcaccctattggatgagatgtgtctggactcagagctg
gtggaggacagctttctgtga
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