Salvelinus namaycush (lake trout): 120052766
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Entry
120052766 CDS
T07522
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4-like
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120052766
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120052766
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
120052766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
TSP1_spondin
ADAMTS_CR_3
TSP1_CCN
PLAC
Motif
Other DBs
NCBI-GeneID:
120052766
NCBI-ProteinID:
XP_038855804
UniProt:
A0A8U0UJB1
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Position
Sna1:complement(70693967..70743596)
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AA seq
1075 aa
AA seq
DB search
MFLQVPQRAEPQQQEAEGVQGGGPGSWGSWGPWSSCSRSCGGGVQEQNRPCLPSYTPSMG
AAAYPSRPGGHHPQHPNQNLGHVVSALRPTVPLHRTNSGRPPPSNSNTSLARRGELRDQQ
RDREAHAGRSPSATRHGGHRPNPYRPLYNNPHLHSYSPVYHQPPAPQPRSNPNPASPPRA
NSNPNPASRPRSNPNSNPNPASQPRSNPNSNPNPVPQPRSNPNPAPQHRSNPNPASQPRS
NPNPASQPRSNPNPASQPRANSNPAPQPRANPNPAPQHRSNPNPASQPRANPNSNPNRAP
QHRSNPNPAPQPRANPNPAPQPRSNPNSNPPWSSSLYQPSQGHQPRQEQQHSSSQASAAQ
QPFGRPYNPMPTSPCVGEHNQYKICNTDACPPASRHIRAVQCSSYNSYPFMGRLYEWEPF
NEVSGDQRCELNCRAIGFRFYVRQSDRVIDGTPCGQNETFICVAGRCQSLGCDEYLGSGK
VMDKCGVCGGDNTACKLVSGLFQQHSLNKVGYHKIVEIPEGAIKINVTETVKSRNYLALK
SRSGRSIINGNWAIDRPGKYEGVGTIFTYRRPNEVTSTAGESFLAEGPTNEILDVYVIYQ
QPNPGVSYEFILPSDNPPRHPNHRPGGNTLHGQSGNDHRGNPNQEGYDPAGVGKYPPQVP
NKQVPAVHPPKRQREYNWKLSGATECSASCGRGSRYTIFRCVHRPSHEQVPENQCDSSTR
PSSQEEPCNLQSCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRTLNVHTSRCRHLE
QPETTSTCQLKICSEWQIRTEWSACSVPCGVGQRTREVHCVSNVGDFVSDEECNMKLRPS
DNENCDMGPCAKSWFFTEWGNKCSAECGMGIRTRGVLCLTNHISSLPLEGCGHERPTDSQ
VCNHGPCESRIEWFTAPWSQCSTECGLGSQQRAVVCLMKSDEGFNVMPPYECSSLDKPLN
QQSCHLKPCGAMWYHTDWSACSKTCEGGFRVREVRCLSDGMLSSEGCEEELKPVEREECN
PEPCVPHIDENCRDKYFNCNVVVQARLCVYDYYKTTCCASCTRVAHRQSQHRALS
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgcaggttcctcaaagggcagagccccagcagcaggaggctgaaggagtgcag
ggtgggggcccaggctcctggggctcctgggggccttggtcctcctgctcccgctcctgt
gggggaggggttcaggaacagaaccgaccctgcctaccctcctacacaccctccatgggt
gcagctgcatacccctccaggccaggtggccaccacccccagcaccccaaccagaaccta
ggccatgtagtgtctgccctaagacccactgtcccgctgcaccgcaccaactctgggaga
cccccaccctccaacagcaacaccagcttggcccgccgaggcgagctgagggaccagcag
agagacagagaggcccatgctggacgcagcccgtcagccaccaggcacggaggccacagg
ccaaacccctaccgtccgctctacaacaacccccatctccacagctacagcccagtctat
caccagcccccagccccccaacccaggtctaaccctaacccagcctcccctcccagggct
aactctaaccctaacccagcctcccggcccaggtctaaccctaactctaaccctaaccca
gcctcccagcccaggtctaaccctaactctaaccctaacccagtcccccagcccagatct
aaccctaacccagccccccagcataggtctaaccctaacccagcctcccagcccaggtct
aatcctaacccagcctcccagcccaggtctaaccctaacccagcctcccagcccagggct
aactctaacccagccccccagcccagggctaaccctaacccagccccccagcataggtct
aaccctaacccagcctcccagcccagggctaaccctaattctaaccctaaccgagccccc
cagcataggtctaaccctaacccagccccccagcccagggctaaccctaacccagccccc
cagcccaggtctaaccctaattctaacccaccctggtcctcctcactctaccagcccagc
caggggcaccaacctaggcaggagcagcagcactcatccagccaggcctcagcggctcag
caaccctttggacggccctacaaccccatgcccacctccccctgtgtgggagagcacaac
cagtacaagatttgcaacaccgatgcctgtcctccagccagtagacacatcagagcggtg
cagtgttcttcctacaacagctatcccttcatgggtcgactgtacgagtgggagcctttc
aatgaagtttcaggcgaccagcgttgtgagctcaactgtcgtgcgatcggtttccgcttc
tacgtgcgtcagtcggatagggtcatcgatgggacgccgtgcggccagaacgagactttc
atctgtgtggcggggaggtgtcagagtcttggctgtgatgagtacctgggctcaggcaag
gtgatggacaagtgtggggtgtgtggcggggacaacacggcctgtaagctggtgtcaggg
ctcttccagcagcacagcctgaacaaggtgggctaccacaagatagtggagatcccagag
ggagccatcaagatcaacgtcaccgagacggtgaagagcaggaattacctggctctgaaa
agccgctcaggtcgctccatcatcaatgggaactgggccattgaccggccagggaagtat
gagggggtgggcaccatattcacctaccgacgacccaatgaggtcaccagcaccgccggg
gagtccttcctggctgaagggccaaccaatgagatcctggatgtttatgtgatctaccag
cagcccaacccaggagtgagctatgaattcatccttccctctgacaaccctccacggcac
cccaaccacagacctggagggaacactctgcatgggcaaagtgggaatgaccaccggggc
aaccccaaccaggaggggtacgatccagcaggagtgggcaaataccctccccaggtaccc
aacaagcaggtgccagcggtccatccacccaaacgtcagagagaatacaactggaaactg
tctggggcaacagagtgtagcgcctcctgtggcagaggtagcaggtacaccatcttccgc
tgtgtccacagaccgagccatgagcaggtaccagagaaccagtgtgacagcagcaccagg
cccagttcacaggaggagccctgcaaccttcagtcctgccctgccttctgggacattggt
gagtggtcggagtgcagtaagacatgtggcctgggtatgcagcaccgccaggtcttgtgc
aggcaggtgtatgccaaccggaccctcaacgtccacaccagccgctgccgccacctggag
cagcctgagaccaccagcacctgccagctgaaaatctgcagcgagtggcagataagaacc
gagtggagcgcctgctctgttccctgtggcgtgggccagaggaccagggaggtgcactgt
gtcagcaacgtgggagactttgtgtcggacgaggagtgcaacatgaagctgcgacccagt
gacaatgagaactgtgacatggggccctgtgctaaaagttggttcttcactgagtggggg
aataagtgttctgctgagtgtgggatgggcatccggacccgtggcgttctgtgcctgacc
aatcacatcagcagcttgcctctggaggggtgtggccatgagcgccccactgactctcag
gtctgtaatcacggcccctgtgagagtcgcatcgagtggtttacagccccctggagtcag
tgctcaacagagtgtggcttgggcagccagcagagggcagtggtgtgtctgatgaagtct
gatgaggggttcaatgtaatgccgccctacgaatgttcttctctagacaagcctcttaat
cagcagagctgccacctcaagccctgcggggccatgtggtaccacacagactggagcgct
tgttctaagacatgtgaggggggcttccgtgtgagggaggtgcgctgtctgtctgatggc
atgctttccagtgagggctgtgaggaggagctgaaaccagtggagagagaggagtgcaac
ccagagccctgcgtcccacacatagacgagaactgtcgagacaagtatttcaactgcaat
gtggtggtccaggcacgtctctgtgtgtatgactactacaagacaacctgctgtgcctcc
tgcacacgagtggcccacagacagtcacaacacagggcactcagctag
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