Salvelinus namaycush (lake trout): 120052909
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Entry
120052909 CDS
T07522
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120052909
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120052909
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120052909
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120052909
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
120052909
NCBI-ProteinID:
XP_038856052
UniProt:
A0A8U1BNQ4
LinkDB
All DBs
Position
Sna8:complement(57678080..57717866)
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AA seq
2283 aa
AA seq
DB search
MAISTQLGLLLWKNFTYRRRQTLQLVIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALRKLQSNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDNNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSVATDGLLESLGALAVELASMKSWKEMRNEIHYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDEPVSAYDNTSTPY
CNSMMRSLEASPISRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWTFMESSEEMDLVRTLLQNNASARFFNDRLAGTEWKAEDVSRFLTKTAEDK
RPAGSAYTWREVFNETDDAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIVRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNMQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKGDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYKAAKGGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDAAELPKSDGTIPARRHRRHAFGDHQSCLKPFTEDDAFDFND
SEGDPESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPA
VFVCIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFG
SRCNSPHAPCNTLDDEWAAPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPA
GAGGLPPPQVKISDKGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGA
RNTQLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRASLPAGQDSSKYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWVSNFIWDMCNYIVPATLVII
IFICFQQDAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FRSPLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSLRTDQKPIGEEDEDVARER
QRILGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEK
EVCEVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKE
WLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISVHKRDAVAVDITQLKSFLTDEKARE
SCV
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggccatctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctagttatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccgccctacgagcaacatgaatgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtgcaagggatcatctgtaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgcctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctgaggaaactacagagcaacacggca
ggtttcaagctgaaggactttctccgcgataaggagaccttatcgtcgttcctgcatcgc
aacgcctccctatcccatcatgccgtccagcagattgtagaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaataatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtccaacctggacttc
ctaaaacccatacggaaggatgtgaagtccgaccctgaggtcgtccagaaggtatccgtg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggccaacgccacaggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggtggactg
aagatcaagtccctcaactggtacgaggacaacaactacaaggccctgttcggtaaccat
ggcggcaacggcagcgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagctagccccatctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctctacacccccgacactcccgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaccttcatggagagcagtgaggagatggac
ctggttcggacactgcttcagaacaacgccagcgcccgcttctttaacgaccgtctggct
ggcacagagtggaaggcggaggacgtgtcccgcttcctgaccaagactgcggaggacaaa
cgccccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgttcccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacattgacaatgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggccgacccctttgaggacctgcgctacatctggggtggtttctcc
tacctgcaggacgttatagaacagggcatcgtcagggcggtgacgggcagtaaggagaag
actggagtctacatccaacagatgccttacccctgctacgtagacgacatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgtttctggcttcctttgctgtggtaaccatcatgcagtgcttc
ctcatcagtaccatcttctcccgtgccaacctggcggcggcctgcggaggaatcatctac
ttcaccctctacctgccctatgtcctctgtgtagcctggcaggactacgtgggtttcggg
gctaaagtcattgtgagcctgttgtccccggtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggaatccaatggtccaacctgttgtccagccccttg
gaggaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtacttccccttcaccaagtcctactggtgtggagagaaacaagggaagaatatg
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtatatagccatggcaacaagctggct
gtagacgggttgaccctgggtttctacgaggggcagatcacctccttcctggggcacaac
ggagccggcaagaccactaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagcgccatccgacagaacctg
ggcgtctgccctcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaaactgtcagtggcgttggcgttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggcatttgggacctgcttctg
aagtatcgtgcaggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacggggtactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgtaggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaacctcaggccctcacagtcctaaagggggacagtgtttct
gagagcagctctgatgctggactgggtagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgctgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacaaggcggccaaaggcggagccttcgtg
gaactcttccacgagatcgacgaccgcctgtctgacctcggcatctccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgct
gctgaacttcccaaatctgatggcaccatcccggctcgtaggcaccgcagacacgcattc
ggagaccaccagagctgtctgaaacccttcaccgaggacgacgctttcgacttcaacgac
tcagaaggtgacccagaatctcgtgagacggactggctgggaggctcggatggtaaaggc
tcgtaccaggtcaaaggctggcgtctgattagacagcagtttgtggcgttgatatggaaa
cgcttcctgtatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgct
gtgtttgtgtgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtacccc
agtctagagctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcc
cctgaggatgcagacactaacaagctgttgggtgccctgacaaactatgatggctttggt
tcacgctgtaactcacctcatgctccttgcaacacgttggatgatgagtgggccgctcct
gaggtaccggagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccc
tctcctctgtgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcg
ggagctggtggtctgcctcctccacaggtgaaaatcagtgacaaaggtaccctgcaaaat
ctgactggcagaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaa
agtttgaagaacaaaatctcggtcaatgaattcagatatggtggattctcattgggcgct
aggaacactcagctcctcccaccaggtgatgatattgatcaggccatctctgagatcaga
cgacgcttccacctggaaagagggactgctgctgaccgtttccttgccagcttatccagt
tttatccagggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtgg
cacagcatcgggtctttcctgaacgtgatgaacaacggaatcctgcgcgccagcctgccc
gccggccaggactccagcaagtatggcatccgtgccttcaaccacccactcaacctcacc
aaggagcaactgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatc
tgcgtgatcttcgccatgtctttcgtcccggccagcttcgtagtcttcctcatccaggag
agagtgaacaaggccaaacacatgcagttcatcagtggggtgcagcccttcctctattgg
gtgtcaaacttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatc
atcttcatctgcttccaacaagacgcctacgtctcctccaccaacctgcctgtactggcc
ctgctgctgctgctctatgggtggtccatcacgcccctgatgtacccggcgtccttcttc
tttaagatccccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatc
aacggcagcgtctccaccttcgtcctcgagctcttcggcagcaacgagatcggcgggatc
aacgacatcctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctc
atcgacatggtgaagaaccaggccatggccgacgctctggagagatttggtgagaaccgg
ttccgttcccctctggcgtgggacatggtgggcaagaacctgttcgccatggctgtgcag
ggcgtggtcttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccaga
tctttgcgcaccgaccagaaacctatcggtgaggaggatgaagacgtggccagagagagg
caaaggattctgggaggagggggacagtctgacattctggaactcaagcagctgaccaag
gtgtacaatagaaaacagaaaccagcagtggatcgtctttgtgtgggaattcctccagga
gagtgttttggtctgcttggagtcaacggagcaggaaagacgagcaccttcaagatgctg
actggagactcaatagtcacgagtggagaagcttacctggcaggaaagagtgtgttgacg
gagataaacgaggtgcaccagaacatgggctactgccctcagtttgatgctatcaacgac
ctgctgactggcagggagcaccttgagttctacgccatcctgaggggggttcccgagaag
gaagtgtgtgaggttgcagagtggggcatccgtaaactaggcctgatcaagtatgtggac
aaggcagcagggagctacagtggagggaacatgaggaaactctccacggccatggcactg
atcggtggtcccccggtggtcttcctggacgagcccaccactggtatggacccaaaggcc
agacgggctctgtggaactgcattctcagtatcgtcaaggaggggcgatcggtggttctc
acctcgcacagtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaat
gggaggttccgctgcctgggcagcgtacagcacttaaagaacagatttggggatggctac
accatcatcctccgggtggcaggaccagacccggacctgaggccggtgatggagtttatt
gagaaggagcttccaggaagcactctgaaggagaagcacaggaacatgctgcagtatcag
ctgtcctcctccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggag
tggttgcacattgaggactactctgtttcccagacaacactagatcaagtgtttgtcaat
ttcgccaaggaccaaagtgacgaggaccacttaaaagacatttccgtgcacaagagagac
gcggtggcagtggacattactcagctcaagtctttcctcacagacgagaaggccagggag
agctgtgtgtga
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integrated database retrieval system
