Salvelinus namaycush (lake trout): 120052969 Help Entry 120052969         CDS       T07522                                  Name (RefSeq) dmX-like protein 2   KO K24155   rabconnectin-3a Organism snh  Salvelinus namaycush (lake trout) Pathway snh04142   Lysosome Brite KEGG Orthology (KO) [BR:snh00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     120052969  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:snh04131]     120052969 Membrane trafficking [BR:snh04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     120052969  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     120052969    RAVE complex     120052969 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Rav1p_C WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_IFT140_1st EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_HPS5 Beta-prop_DCAF12 WD40_MABP1-WDR62_2nd Beta-prop_LRRK2 Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_SPT8 NBCH_WD40 Motif Other DBs NCBI-GeneID:  120052969 NCBI-ProteinID:  XP_038856149 UniProt:  A0A8U1EFM3 LinkDB All DBs Position Sna1:complement(74909038..74993963) Genome browser AA seq 3079 aa AA seqDB search MEAYGSGCDIVILASDFECVQIIPGAQNGNIQVGCVECSHQLGRIAASYGNTVCIFEPFA TNSNKRHKQLNYQWQKTGQFFLNAISYNLAWDPQGNRILAATERLQLWAPPSADTLIEEE DGPVTDDKPHPALNDWKCVWECKTAMSVHITKWSPDGEYFATAGKDDCLLKVWYPTTGWR SAVVLPDLPDKKGPQVHFSFIYLAHPRSVTGLSWRKTSKYMAKGSVCNVLLTSCEDGVCR LWSETVLPEDSILGGQITENTYSSSLPGLGGKDKIQHALESMSHLKHLRRGRRRSSALVS HTELLPSQMGTHETHTHRHISHHANALCHFHISASINPASDIPAVLAESAVFTPEDGSGG GGFVVHWLNNKDLSFTTSMDLFMLQLRKLSEQQLDQATDDALDQNGSPIKFDFDLDEMSE KGSSEHGEEGDGGEGSTKASSPGSSSSVPLPSMLLERKMEALTLEWNKSPDMLFTIHPSD GSFLVWHIKYLDEYIQGIFRQVQVSFSSRIPVAFPTGDANSLSKNILMYACSFSNVDSSN AVGEQGKRARRLPRSASAGLGSSALSLSLGQAPGIGPAVMMVSKHVDGSLNQWAVTFAER SAFSNVLTVSHTFRYCGHRFHLNDQACHTVLPLLLTSSHHNALLTPPSAPGSIDLDQPPT HTPPPRGRRRKQLRNAATRTFHDPNAIYSELILWRVDHIGPLSCTGGVSELARINSLHTS AFSNVAWLPTLVPSSVLGTYCNSSSACFVASDGKNLRLYQAVVDARKLLDELSDPETSKL VGEVFNIVSQQSTARPGCIIELDVITNQCGSTTQLLHVFQEDFILGYKPQEDPELYTTSY PYTEEYHPTPFSEKFFLVVIEKDLNMNSVLQMWHLHLQSVQACVDDPVPERSYQSQLTIP FQQSTADTSSSPLTRSASTANLQSASKLILSSKLVCSHRLDLPVGVEVTRATPSAGHLSS SSIYPVCLAPYLIVTTCSDSRVRFWRCSVEGGQTALGCEEGENRVYHWEPWALLNEEEDN NSAVCVPGRPVAVSCSYTGRLAVSFKQPRPGHIPGQSHGPAGDFSMHVSIFECESTGGSE WVLEQTLHLDDFTRPSSTLDPGVSVDSNLFVYSRSDLYMSRDHHSPNIKHYVHLDWLSKE DGSHILTVGVGSNILMYGRISGVVNEQTASKDGVAIITLPLGGSIKQGIRSRWILLRTVD LLSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWRQDRKPGDAEGDSLSSEDNIAGG VRGSGGQTATAAATGGSSSAFKGRARSKSVFEGNVAIDEALQAPAGLQEGGLFEAAHSLS PTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVAVVRDVEAGEGGTRRHLSRTIS VSGSTAKDTIVAGRDGGRDYTEINSIPPLPLYALLSADLDTSYKGGEEGAKGGKVAEVEG ARKTGGDQYTDLFQLQAVTTDDFVSFATEKVEKKSRFINLSQYGPTYFGPEHAQVLSSQL MHSSLPGLTRLEQMFLVALADTVATTSSEVSSSTDKQYTGGEALDECGLRYLLAMRLHTC LLTSLPPLYRMQLLHQGLSTCHFAWAFHSEAEEEMLNMIPAMQRGDPQWSELRAVGVGWW IRNINTLRRMVEKVGKAAFQRNNDPLDAALFYLATKKKAVLWGLFRSQRDEKMTVFFKNN FSEDRWRKAALKNAFSLLGKQRFEQAAAFFLLAGSLKDAVEVCLEKMEDIQLAMVVARLY EADYESSSTCQAILYEKVLGCQRNGSGYHCTKLHPDPFLRSIAFWIMKDYTKALGTLLEC IPKEDDENPDVMVKSCNPVVFSFYNYLRTHPLIIRRHYASPEGAVTSLGLTSEKSSVDEI NLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKKSVSSSPLSKGSSMANVSSSLPLE NGNQGALDWASPAPVKANPAWGTEESSATLDWSQPLVKVEDDGLQLDWGDDKNDDEADGG LTMKKTDVETKADEGSGGVRPPGLQREDSQGESEVDVIAEQLKFRACLKILMTELRTLAT GYEVDGGKLRFQLYSWLEKEIGAMHRICNYKVAGKEESQELERWEDGGGVEDVFEESLGG GGGTETGAYERHQLGRRRLAAKQLHAERRKAWLRKNQALLRVFLSYCSLHGAKGGGVTSV RMELIFLLQESQQETTVKQLQSPLPLPTTLPLLSASIATTKTVISNPVLHLSNHIHDILH TITQMELPPHPELMDDRVNLLHTLAASLSACIYQALCDSHSYSSQAEANQFTGMVYQGLL LSERRRLRTESIEEHTTPTSAPAQWPGVSSLIALLQSAQGEDQPKLNVLLCEAVVAVYLS LLIHGLGMHAGNELFRLAAHPLSNKMWAAVFGGGAKIIIKPKRNAEITPAAAGKARTDSS SSVTSEPDSGTKAKPAVPAPPLAEDVDRLRRRFNMRMLVPGRPVKEVPATPPPVPAERPA YREKFIPPELSMWDYFVAKPFLPLSDSGALYDSDESGEEDDDDDDDDAFLSDTQMTEHSD PNSYSWSLIRLVMVKLALHNVKTFLPLTGLDFTDLPVTSPLGNAVLKTLENWETILQERM NKFDGPPPNYINTYPTDLSTGGGPAILRHKAMLEPDNTPFKNKNHISFPARRLWHYLVKQ EVLQETLIRYIFTKKRKQSECVEGYMDLLSPNCVSGALRSNKVEGDLGYPGRNAKIIHKE SDIIMAFAINRANTNEIVLASTHDVQEVDVSTLLAAQPYTWIGEDFDKESHSSDDVDYRS SHTNVAQASSTPSHFNPKDMAASASMPWLGSGQTSMGASVIMKRNLNNVKRMTSHPIFQY YMTGAQDGSVRMFEWNRPQQLICFRQAGNARVTRLYFNSQGNKCGVSDGEGFLSLWQVNQ TSSNPKPYVSWQCHSKTCGDFAFITSSSLIATAGQSNDSRNVCLWDTLISPSNAMVHAFP CHESGATVVQYAPKQQLLISGGRKGFVCVFDIRQRQLLHTFQAHDSAVKALALDVSEDFF VTGSAEGNMKVWKLAGHGLMHSFSTEHAKQSIFRNIGAGVMQVETRPGNRIFTCGADGTL KMRVLPDRYNIPSSIFDIL NT seq 9240 nt NT seq  +upstreamnt  +downstreamnt atggaggcctatggttcaggctgtgatatagtgatcttggccagtgattttgagtgtgtt cagatcatccctggggctcaaaatggcaacatccaggtgggctgtgtcgagtgctcccac caactgggcaggattgcagcgtcctatgggaacacagtgtgtatctttgaaccattcgct accaactcaaacaaacgccacaagcagcttaactaccagtggcaaaagacaggacagttc ttccttaatgctatcagctataacctggcctgggacccacaagggaaccgtattctggca gctacagagcgcctgcaactgtgggcccctccgtcagcagacacactgatagaggaggag gatggacccgtgaccgatgacaaacctcaccctgccctcaacgactggaagtgtgtctgg gagtgcaagactgcaatgtctgtgcacatcaccaagtggtctcctgatggggaatacttt gcaacagccggcaaggatgactgtctgttgaaggtgtggtaccccaccactgggtggcgc tctgctgtggtgctcccagacctcccagataagaaaggccctcaggtccacttctccttc atatacctggcccacccccgctctgtcaccggcctgtcctggaggaagaccagcaaatac atggccaagggtagtgtgtgtaatgtgttgttgacgtcgtgtgaggacggtgtctgtagg ttgtggtctgagacggtgctgccagaggacagtatcctgggtggtcagatcactgagaac acatacagctccagcctgccaggcctggggggcaaggacaagatacagcacgccctggag tcgatgagccacctgaagcacctgcgtcgtggtcgtcggaggtcgtctgccctggtgtct cacactgagctgctgccgtctcagatggggacccacgagacacacacacaccgccacatc tctcaccacgctaacgctctctgtcacttccacatctctgccagcatcaaccctgcctcg gacatcccagcggtgctagcggagtctgcagtgtttactccggaggacgggagtggagga ggagggtttgtggtccactggctcaacaacaaggacctgtccttcacaacctccatggac ctgttcatgctgcagctccgcaagctctcagaacagcagctggaccaagccaccgacgac gccctcgaccagaacggctcccccattaagtttgactttgacctagatgagatgtcagag aagggttcatcagagcatggtgaggagggtgatggtggtgagggcagcaccaaggcgtcg tccccaggctccagtagctcagtgcccctgccctccatgttgctggagaggaagatggag gcgttaactctggagtggaataagagtcctgacatgctgtttaccatccaccccagcgac gggtccttcctggtctggcacatcaaatacctggacgagtacatccaggggatcttcaga caggtgcaggtgtcgttctcgtcccgtatcccggtggcgttccctacaggcgacgccaac tccctgagtaagaacattctgatgtacgcctgctccttctccaacgtggatagctccaac gctgtgggggagcaggggaagagggcccgccggttgccccgttctgcctctgctgggctg ggttcctcagccctcagcctctctctgggccaagctccaggcatcggccccgctgtcatg atggtgtccaaacatgtggacgggtctctcaatcagtgggcggtgacgttcgccgagcgc tcggcgttctccaatgttctaaccgtgtctcatacgttccgttactgcggtcaccggttc cacctcaacgaccaggcgtgtcacaccgtcctccccctactgctgacctcctcccaccac aacgctctcctcacccccccctccgcccccggcagcatcgacctcgaccagccacccaca cacacacctccccccagaggacggcgcaggaagcagctgcgtaacgcggccaccaggacg ttccatgacccgaacgccatctacagtgagctgattctgtggagggtggaccacatagga cccctgtcctgcactggaggggtgtcagagctggcccgaatcaactccctacacacatca gccttctccaatgtagcatggctgcctaccctggtacccagctctgtgctaggtacgtac tgtaacagttccagtgcgtgcttcgtagcgtcagacggtaagaacttacgtctctaccag gctgtggtggacgccaggaaactactggacgaactgtcagaccctgagacctcaaaacta gtaggagaggtatttaacatagtgagccagcagtcgacagccagaccaggctgcatcata gaactagatgtcatcactaaccagtgtggatctaccacccagctccttcatgttttccag gaggactttattttggggtataaacctcaggaggacccagagctctacactacatcctac ccttatacagaggagtaccaccctactccgttctctgagaagttcttcctggttgtcata gagaaggacctgaacatgaactctgtgctgcagatgtggcacctgcacctacagtccgtg caggcctgtgtggatgatccggtcccagagaggtcgtaccagtctcagctgacgatcccg ttccaacagagtacagctgacacgtcctcctcccctcttactcgctcagcctcgacagct aacctgcagtcagccagcaaactgatcctcagctccaagctggtctgtagccaccgtctg gacctgcctgttggggtggaggtgaccagggctacgccctccgcaggtcacctgagttcg tcgtccatctaccctgtgtgtctggccccctacctgatcgtcaccacctgctctgactcc cgcgtccggttctggcgatgctctgtggaggggggacagactgccctggggtgtgaggag ggggagaacagggtctatcactgggagccttgggctctactcaacgaggaggaggataac aacagtgctgtgtgtgtcccaggacgtcctgtagccgtgtcctgttcctacactggacga ctggctgtctccttcaaacagccccggcccggacacatcccgggacagagccatggtcca gcaggggacttctccatgcacgtgtccatctttgagtgtgagtctacgggggggtctgag tgggtgttggagcagaccctccacctggatgacttcactaggccctcctctaccctggac cctggagtcagtgtagactccaacctctttgtgtacagcaggtctgacctgtacatgagt cgcgaccaccactctcccaacatcaaacactatgtccacctggactggctgtccaaagag gacgggtctcatatcctcacggtgggggtgggatccaatatcctcatgtacggtcgcatc tcgggcgtggtcaacgaacagaccgcaagcaaggacggggtggcgatcatcaccctacct ctaggcggcagcatcaaacagggtatccgatcccgctggatcctgctgcgcactgtggac ctgctctcctctgtagacggcaccccctccctgcccgtgtccctgtcctgggtgagggac ggcatcctggtggtgggtatggactgtgagatgcacgtgtacgcccagtggcgccaggac cgcaagcccggtgatgccgagggggacagcctctcctctgaagataacatcgctgggggg gttagagggagcggagggcagacggccactgctgcagccacggggggatcctcgtcggcg ttcaaggggcgcgcccggtccaagagtgtgtttgagggcaacgtggcaatcgacgaggct ctccaggcgccggcagggctgcaggaggggggtctgtttgaggcggcccactccctgtcc cccaccctgcctcagtaccatccaacacagctgctggagctcatggacctggggaaggtc cgccgcgccaaggccatcctgtcccacctggtgaagtgtatcgctggggaggttgctgtg gtgagggacgtggaggcaggtgagggtggaaccagacgccacctgtcccggacaattagt gtgagcggcagtacggctaaagacaccatcgtggccggccgcgacgggggacgagattac acagaaatcaactccattccccctctacccctctacgctctgctctctgctgacctggac acctcctataagggaggagaggagggggcgaagggagggaaggtggctgaggtagagggg gcgaggaagacaggaggagatcagtacacagacctgttccagttgcaggcggtgacgaca gatgactttgtgagcttcgctacagagaaagtagagaagaagtctagattcatcaacctg tctcagtacggacccacctacttcggaccagaacacgcacaggtgttatctagtcagctg atgcattccagtcttccaggtctgaccaggttggaacagatgtttctggtggctctagct gatactgtagctaccaccagttcagaggtcagcagctccactgacaaacagtacacaggt ggtgaggccctggatgagtgtgggttgaggtacctgttagccatgcgtctacacacctgt ctcctcacctctctacccccactgtaccgcatgcagttgctgcaccaaggtctgtctacg tgtcactttgcgtgggcgttccactcagaggctgaggaggagatgttgaatatgatcccg gccatgcagagaggagaccctcagtggtctgagctacgggctgtaggggtgggctggtgg atccgcaacatcaacacactacgcaggatggtggagaaggtgggtaaagcagcgttccag aggaacaacgatcctttagatgcggctctgttctacctggcaacgaagaagaaggctgtt ctctggggcctgttcaggtctcagcgtgatgagaagatgacagtgttctttaagaataac ttcagtgaggaccgttggcgtaaagcagctctgaagaacgctttctctctgctggggaaa cagcgctttgaacaggctgctgccttcttcctgctggctggctccctgaaagacgccgtc gaggtgtgcttggagaagatggaagatatccagttggccatggtagtagccaggctgtac gaggccgactatgagagcagttccacctgccaagccatcctgtatgagaaggttttgggc tgccagaggaatgggtcggggtaccactgcaccaaactacacccggacccgttcctacgc agcatagccttctggatcatgaaggactacaccaaggccctgggcacgctgctagagtgc atccccaaagaggatgatgagaacccagatgtgatggtgaagtcgtgtaacccggtggta tttagtttctataactacctgaggacacaccccctgatcatccgccgccactacgcgtcc cctgagggggctgtgacatcactaggcctcacctcggagaagagcagcgtcgacgagatc aacctcatcgaacgcaaactcttcttcaccaccgccaacgcacacttcaaggtgggctgt ccagtgcttgccctggaggtgctctctaagatccccaaggtgaccaagaagtcagtctcc tcgtcccccctaagtaaaggctcttccatggccaacgtcagctctagcctgcctctggag aatgggaaccagggggccctagactgggcctctcctgccccagttaaggccaatcctgcc tggggtacagaggagagctcagccacactggactggagccagcctctggtcaaagtggag gacgatggactgcagctggactggggagatgataagaacgatgatgaagctgatggtggt ctgacaatgaagaagactgatgtggagaccaaagctgatgaggggtctgggggggtgaga ccacctgggctgcagagagaggactctcagggtgagtctgaggtggacgtgatcgcagag cagctgaagttccgagcgtgtctgaagattctgatgacagagctcaggacgctagctacg ggctatgaggtggacggggggaagctgcgctttcagctctacagctggttagagaaggag ataggagccatgcaccgtatctgcaactacaaggtggcggggaaggaggagagccaggag ctggagagatgggaggatggaggaggagtagaggacgtgtttgaggagtccctggggggt ggcgggggtacggagacgggggcgtatgagcgccaccagctggggcgtaggcgtctcgca gccaagcagcttcatgctgagaggaggaaggcgtggctaaggaagaaccaggctctgctc cgggtcttcctgtcctactgcagcctgcacggcgccaagggagggggggtcacctcggta cgcatggagctcatctttctgctgcaagagagccagcaggagactacagtgaaacagctc cagtcccccctgcccctccccaccaccctccccctcctctcagccagtatcgccaccacc aagacggtgatctccaaccctgtgctccacctcagcaaccacatccatgacatccttcac accatcacacagatggagctgcctccacaccctgaactcatggacgacagggtgaatctc ctgcacaccctggctgcctctctgtctgcctgcatctatcaagccctgtgtgacagccat agctacagcagccaggcagaggccaatcagtttacagggatggtgtaccagggtctgctg ctgagtgagaggagacggctacgcaccgagagcatcgaggagcacactacacccacctct gcccccgcgcagtggccaggtgtgtcctctctgattgctctgctccagtcagctcagggc gaggatcagcccaagctcaatgtgttgctgtgtgaggctgtggtggcagtttacctgtcc ctgctcatccatgggctgggcatgcacgctggcaacgagctgttccgcctcgctgctcac cccctcagcaacaagatgtgggcggccgtgtttgggggtggggctaaaatcatcatcaaa cccaaacggaacgccgagatcactccagcagcagcaggtaaagctagaacggactcgtca tcgtcagtgacctctgaacctgactcagggactaaggctaaaccagccgtgccagcccct cccctggcagaggatgtggacagactcagacgaaggtttaatatgaggatgctggttcct ggtcgtccagtaaaggaggtccctgccaccccccctcccgtccctgcagagagacccgcc tacagggagaagttcattcctccagagctcagcatgtgggactactttgtggccaaaccc ttcctgcccctgtcagacagtggagctctgtacgactcagatgagagcggagaggaggat gacgacgacgatgatgatgatgccttcctctctgacacacagatgactgaacactctgac cccaactcatacagttggtctctgatccgtctggtcatggtgaaactggctctacataac gtcaagaccttcctccctctcactggactggacttcacagacctgccggtgacgtctcct ctggggaatgctgtgctgaagacgctagagaactgggagaccatactccaggagaggatg aacaagtttgatggtcctcctcccaactacatcaacacctaccccactgacctcagcaca ggaggggggcccgccatactgagacacaaggccatgctggagcctgacaacacacctttc aagaataagaaccacatttcgtttcctgcgaggcgtctctggcactacctggtgaaacag gaagttcttcaggagactctgattcgctatatcttcactaagaagaggaagcagagcgag tgtgttgaaggctatatggatctcctcagcccaaactgtgtatctggagctctcaggtcc aacaaggtggagggagacttaggctacccaggaaggaatgctaagatcatccacaaggag tctgacatcatcatggccttcgccatcaacagggctaacaccaatgagatagtgctggcg tccactcacgacgtgcaggaggttgatgtgtccactctgttagctgctcagccctacacc tggataggagaggactttgacaaggagtcacacagttctgatgacgtggactaccgttct tcccacactaacgttgcccaggcctcctctaccccgtcccacttcaaccccaaagacatg gcagcctctgcatccatgccctggctggggagtgggcagaccagcatgggggctagtgtg attatgaagaggaacctgaacaatgtgaagagaatgacctcccaccccatattccagtac tatatgactggggctcaggacggcagtgttcgtatgtttgagtggaacaggccacagcaa ctcatctgcttcagacaggcaggcaacgccagagtcacacgcctctacttcaactcacag ggaaacaagtgtggtgtatcagatggagaaggcttcctcagtctgtggcaggtcaaccag acctcctccaaccccaagccctacgtgagttggcagtgccactctaagacctgtggtgat tttgccttcatcacttcctccagcctcatcgcaacggcaggacagtccaacgacagcaga aatgtatgcctgtgggacactcttatttcacccagtaacgccatggtgcatgccttcccg tgccatgagagcggtgcgacggtggtgcagtacgctcccaagcagcagctgttgatctcg ggaggcaggaagggctttgtgtgtgtgtttgacatccgtcagagacagctgctacacacc ttccaggcccacgactcagccgtcaaagccctggcgctcgacgtctccgaagacttcttc gtaaccggctcagctgaggggaacatgaaggtgtggaagctggcaggccatggcctcatg cactcgtttagcacagagcatgccaagcagtccatcttccggaacatcggagcgggcgtt atgcaggtggagacccgccccggcaaccgcatattcacctgcggcgccgacggaaccctc aagatgagggttctacccgaccgctacaacatcccctctagcatcttcgacattctgtag

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