Salvelinus namaycush (lake trout): 120053314
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Entry
120053314 CDS
T07522
Name
(RefSeq) contactin-1a-like
KO
K06759
contactin 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120053314
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120053314
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
snh00537
]
120053314
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
Contactins
120053314
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
snh00537
]
Others
120053314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Sp38
Pur_ac_phosph_N
C2-set_2
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
120053314
NCBI-ProteinID:
XP_038856371
UniProt:
A0A8U1BG95
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All DBs
Position
Sna9:complement(51858912..51910892)
Genome browser
AA seq
1026 aa
AA seq
DB search
MQKWVIPMAKGHRFDRAVESQQGGNASVFGGEPGFYGDDATGYGPVFEDQPVETIYPEES
PEAKITMSCRARANPPATYQWRLDSRNIDLDGDNHYTLVGGDLVISNPIKNKHVGNYSCV
ATNDYGTVVSREAGVQFGYLDFFSSEEREAVHVKEGQGAVLLCAPPPHYPYELSFRWILN
EFPIFITLDKRRFVSQTTGNLYISKVDSSDSGNYSCFVSSTSIAKSVFSKFIPLVPLAER
PIRKYPADIKVKFPDTYALVGQNVTMECFALGNPIPQIRWKKMNGELPSNHDVSMAGARL
HLYNVQYEDEGTYECEALNSKGKDWHRARVSVEAFPEWTESINSTEKDISSDYTMSCVAS
GKPKPRVQWLKNSYPYDKRNLRFSGLTFEDSGMYQCIAENRHGVIYANAELRVIACAPTF
EHNPVKWRILGAKNGRVVTECKPKAAPKPSFSWSKGAELLFNSTRVLIWEDGSLEILNVT
EADEGRYTCFAENNRGKANSTGSLSITEATKITLAPSNADVTVGESTHMQCAASHDSTLD
ITFVWTLDAHAIDFDREGSHYERNLNGGSSGELLIKNTQLNHSGRYTCTAQTPVDNVTAS
ANLVVRGPPGSPGGVRVEEIRDKSVRLIWSRGTDNHSPISKYTIQCRDSFSQEDWRDATT
SPPDVEGNAETATVVDLLPWTEYEFRVIATNTLGTGDPSSPSPKVTTLEAVPVVAPSDIG
GGGGTSRELTITWTPVQPQYYYGRNFGYIIAFKPRDGYEWRKVTVADPEAKHYVHKDSSI
LASTEFEVKVKAFNSKGEGPYSLMAVVYSAQDVPSKAPTSVGARALSATEAIVWWLPVTQ
HTVEGYQVRYWRKAEDSETSSQRVVVSSRENQTRLDNMTPDSHYLVEVKAYNAAGYGPSS
QHLQIYTKKAPPSRPPKIISKKLKGTSVNIAWEHVEPLANESTIDGYKVLYRQASKSTGM
LFTTGKRSIDLPMHKDGDYIVEVRAHSEGGDGAVAQVRISAGGVMAAKSLSLASLLLVAL
LCLMGL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatgggtcatccctatggccaagggacatcgctttgacagagccgttgagagc
caacaaggaggaaatgcatctgtcttcggaggggaacctggtttctacggagacgatgct
acaggttacgggccggtgtttgaggaccagccggtcgaaaccatctaccctgaggagtcg
cctgaggccaaaatcaccatgagctgtcgagcacgagccaacccacctgccacataccag
tggaggttggacagccggaacatagacctggatggtgataaccattacactctggtcggg
ggcgacctggtcatctctaaccccattaagaacaagcacgttgggaactactcctgtgtg
gccaccaacgactacggcaccgtggtcagccgagaggctggcgtccagtttggatacctg
gacttcttctcgtctgaggaaagagaggcggtgcacgtgaaggagggccagggggcagtc
ctgctctgcgctcctcctccacactacccatacgagctgtcattccgctggattctgaat
gagttccccatcttcatcacgctggataaacgtcgctttgtctcccagaccacagggaac
ctctacatctctaaggtggattcatcagacagtggcaactactcctgcttcgtctccagc
acatccatcgccaagagcgtcttcagcaagttcatccccctcgtccccctggctgaacgt
ccaatcaggaaataccccgctgacatcaaagtcaagttcccagacacttacgcgctggtg
ggacagaatgtcacaatggaatgcttcgccctgggaaaccccatccctcagatccgctgg
aagaagatgaacggagagctgccgtccaatcacgacgtcagcatggcgggcgcccgcctc
cacctgtacaacgtgcagtatgaggacgaggggacatacgagtgtgaggccctcaactct
aaaggaaaggactggcacagggcacgggtctctgtagaagcattcccagagtggacagag
tccatcaacagtacagagaaggacatcagtagtgactacaccatgtcctgtgtggctagc
ggcaagcccaaaccccgcgtacaatggctcaagaacagctatccctacgataagcgtaat
ttgaggttcagtggtctgacgtttgaggactctgggatgtaccagtgtatagcagagaat
cgccatggagtcatctatgctaacgcagagctgcgagtgattgcgtgcgcccccacgttt
gagcacaaccctgtgaagtggaggattctgggagctaagaacggcagagtggtcacagag
tgtaaaccgaaagcagctcccaaaccctcgttctcctggagcaagggcgccgaactgctc
ttcaactccaccagggtgttaatctgggaggatggtagtctggaaattctgaatgtgacc
gaagcagacgaggggcgttacacctgctttgctgagaacaatcggggcaaggccaacagc
acaggctccctctccatcacagaggccactaagatcaccttggctccttccaacgcagac
gtgacggtgggggagagtacccacatgcagtgcgccgcgtcacatgattccacgctggac
atcacattcgtctggaccctggacgcccacgccatcgacttcgaccgggagggatcccac
tatgaacgcaacctgaatggcggttccagtggagagctgctcattaagaacacccagctg
aatcactctggacgttacacctgcaccgcccagacccctgtggacaacgtcaccgcatcc
gccaatctggtagtcagaggtccacctgggtctccaggtggggtgcgtgtggaggagatc
agggataagagtgtgcgtctgatctggagccgaggtacagacaaccacagccccatctct
aaatacactatccagtgccgggactcgttctctcaggaggactggagagatgccaccaca
tcccctccggatgtggaaggaaatgcagagacagccacggtggtggacttgcttccatgg
acagagtatgagttcagggtgatagccaccaacaccctggggacaggagaccccagcagc
ccctctcccaaagtcaccacgctggaggcagttcctgtggtggctccctcagacatcggc
ggcggtggcgggaccagcagggagctgaccataacttggacgccggtgcagccacagtac
tattatggacgtaactttggctacatcatcgccttcaagccccgggatggctacgagtgg
aggaaggtgactgtggcagaccccgaggctaaacactacgtccacaaagactcatccatc
ctcgcctccacagagtttgaggtcaaagtcaaggccttcaacagcaaaggggaaggaccc
tatagtctcatggctgtcgtctactctgcgcaggacgtgccatctaaagcccctactagt
gtgggggccagggcgctgtccgccactgaggccatcgtgtggtggcttcctgtcacccag
cacactgtagaaggctaccaggtgcggtactggaggaaggcggaggatagcgagacatcc
agtcagagggtggtggtgtccagcagagagaaccagaccaggctggataatatgacccca
gactcccactacctcgtagaggtcaaggcctacaatgcagccggatacggacccagcagc
caacacttacagatctacaccaagaaagcccccccaagccggcctcctaaaataatcagt
aaaaagctgaaaggcacatcagtgaatatcgcctgggaacatgttgaacccttggccaac
gagtcaacaatagatggctacaaggtcctgtacaggcaggccagcaaatccactgggatg
ctgtttaccactgggaagcggtccatagacctgcccatgcacaaggatggggactacata
gtggaggtcagggctcacagcgagggaggggacggggctgtggcccaagtacgcatctca
gctggaggcgtcatggctgccaagtccctcagcttggcctccctgctcctggtggctctg
ctctgcctgatgggcctctga
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