Salvelinus namaycush (lake trout): 120053329
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Entry
120053329 CDS
T07522
Name
(RefSeq) reelin-like
KO
K06249
reelin [EC:3.4.21.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120053329
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120053329
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Gene cluster
GFIT
Motif
Pfam:
Reelin_subrepeat-B
EGF_Teneurin
EGF_TEN
EGF_2
EGF_Tenascin
Motif
Other DBs
NCBI-GeneID:
120053329
NCBI-ProteinID:
XP_038856383
UniProt:
A0A8U1BK26
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Position
Sna9:55458031..55513719
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AA seq
2180 aa
AA seq
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MDLGSHFPRLLRRCPVRVKWYRRCVQMGPVSQAVEEVPGTSDGMQVESVERDVAEGSQGF
VAPVEEDMDMDIFDIPIDMIAAGNDSIYNLDEESSVYRDAPAFALDGVYISEACPNHCGG
HGDCISGVCFCDMGYTVEQDSCVPAVASPTELAEGFESKLSPVWQTLSGGQVGGGCGTIS
EGKALYFSSSGKREARTVPMDTTNTRLVQFYIRIGGKNVGPTCTRPRSRNEGVIVQFSTN
NGVQWQFLRELDFGSFLDSQVVTIELPPPAKTPYTVFRWWQPQQGKHSAQWALDDVLIGI
NDSSRTGFHDKFDGTSPLRHNWYRIQGGEITVDCLSLDTALSFNSDTTDKKPRYAESWDF
EVSGSSFLQFELSMGCSKVATSSHGVRLEYSTDCGRHWALLTPECVPPAIGCAGYTMSSV
YTATQYNRWRRVTVYLPSAANSPRTRFRWIQPHFIPGADGWALDNVLLAPGCPWMCSGHG
LCDNGCCLCDRGYGGAHCVPLAPLPSILRDDFNENLAAEQWPEVYGAERGTLSGEPLKSG
TALIFKGEGLRMLVSRDMDCTSTLYIQFSFKFITKGVPERSHSVLLQYSVNGGISWLLLD
EFYFPTSTDTLFIHLPLPTSAQTNATRFRLWQPYNSGKKEEVWVIDDLIIDGSSLNNPPV
VSDSFEGGPQDYNWLFYPGGNTGLYCPYQKSGLEDDESAMVFVSSELGEHSITTRDIDVN
ENTVIQFEINVGCTADSSSSNPVRLEFSRDFGATWHLLVPLCSGGPQPSSLCSTELHPAS
VYYPGTTQGWRREVIHFGKLRLCGSIRFRWYQGFYSSGSSPPTWALDSVYIGPQCQDMCN
GHGSCVRGTHCVCDSGYSGPDCSQPDTSNPDFLKEDFEGGAVDADRFRLLSGGKPSRKCG
IMSSGNHLFFSEDGLRMLVTNDMDLSNARFIQFFLRLGCGKASPDPRSQPVLLQFSVDGA
LTWGLLQDFFFSNSSNQARLVALEIPLRARTSATRLRWWQPSENGHFYSPWVIDQVVVGG
SASGWGPLEDDFSSMDGRSWLLHPGGTRMPVCGSDGAAFAFIEKSNTRYAVTTDISLGQD
AFIQFDFSASCSVTNSCYAIELEYSLDLGLHWQPLVRDCLPTSQDCSSYTLQRLLVADIY
NKWGRVTLPIPTYARSAATRFRWFQQAPFDKQQTWALDNLYIGDGCSDMCSGHGRCQQSS
CVCDPEWEGEYCDEPVAPLPSQLKDSFSRAPSLSHWHLVTGGKLSTVCGAVASGAALHFS
GSCSRQLVTVDLNLTNAEFIQFYFMYGCMTPPSNRNQCVLLEFSLNGGINWILLTEIFYD
LYRKPGFVNVLLPHAARQEGVRVRWWQPTHEGSDHSDWALDNVLIAGSDPRAQISDTFGG
VALPNHERAPADGTPTGRIGLLNEGEEESTSGIYTGDLDETTTYTTTVSDHWLFSEDCAV
QRFCSSPDGVMVCGNDDGREVYAVTHDIVPDKGWVMQFKIVVGCSVPERHAEHQVHVQYS
VDFGVSWRYLVPQCLPADPCCGGQISQPSVFFPAQGWKRAVYPLKDSLADTAVRFRFYQQ
HSDTQWAVENFYIGPACDSHCGGHGECLDQRCICEPGFTGPSCYASTALKTSLKERFDWE
GLPGPQWQVLEGGRPCTDCGVLVEGTALYFAGADARQAVTADLDLRGAKFVEYWARIGSE
DNMTMCHRPTCRKEGVLLDYSKDGGVSWTLLHEMDYLKYVSVRRDYIVLPEGALSNTTRL
RWWQPFSVSSGLASPGLERAQWAVDNILVGGSDINPSTLLDTFDDEGVSHEESWSFYPNA
VRTAGFCGNPSFHLYWPNKNQDKTHNILATRELIVQPGYILQFKIVVGCEADSCEDHHSV
LLQYRKDARSDSWQLVQSECLPSSVNNVGCSPFMFHESTIYSPVNSSTWTRVTVQLPDHV
SSGATQFRWIQKEGVGERHGWGVDHMYIGEACPGLCSGHGYCTSGVVCICDEGHHGDDCS
LSGSDLPSSIKDNFESGSMSEESWQLIQGGGVGSGCGQLSPHAHGDSLYFNGCKMRQAVT
KPLDLTRASKIMFVLQIGSVSQTDSCNTALDQPDTVDRAVLLQYTVNNGVSWHVIAQHQP
KDFIKAQRVSYNIPLEARVKGVELRWWQPRHDGVGHDQWALDHVEVVLTRKQNYMMNFAR
QTGLRHYYSRKRRALLQHRA
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atggatctggggagccatttccccagactgctaaggagatgcccagtacgagtgaagtgg
tacaggaggtgcgttcagatggggcctgtctcccaggcagtggaggaggtgcccggtacg
agtgatgggatgcaagtggagagtgttgagagggatgtggcggaggggagtcaggggttt
gtggcccctgttgaggaggatatggatatggacatttttgatattcctattgatatgata
gctgctggcaacgactcaatttacaatctagatgaggagagtagtgtgtacagggacgct
ccagcctttgccctagatggagtctatatctctgaggcctgccccaaccactgtggagga
cacggagactgcatctctggggtctgcttttgtgacatgggatacacagttgagcaggac
agctgcgtgccagccgtggccagccccacagagctggcagagggctttgagagcaagctg
agcccggtttggcagaccctgagtggggggcaggttggagggggctgtggcaccatcagc
gagggaaaggctctgtacttcagcagctctgggaagagagaggcacgcactgtacctatg
gatacgacgaacacacggcttgtccagttctacatccgtattggagggaagaatgttgga
cccacctgcaccagacctcgctcccgcaacgaaggagtgatagtccagttctccaccaac
aacggggttcagtggcagttcctacgtgagctggactttggttccttcctggattcccag
gtggtcaccatcgagctgcctccacccgccaagactccctacactgtgttccgctggtgg
cagccacagcagggtaaacactcagcccagtgggctctggatgatgttctgatcggtata
aatgacagctccaggactggcttccatgataagtttgacgggacgtctcctctgagacac
aactggtaccgcatacagggaggagagatcactgtagactgtctgtctctggatacagct
ctgtccttcaacagcgacaccactgacaagaagccgcggtatgcagagagctgggacttt
gaggtgtccggctcctccttcctgcagtttgaactgtctatgggctgcagtaaggttgcc
acctcatcccacggtgtcaggctggagtactccacggactgtgggcgccactgggccctg
ctcaccccagagtgtgttccacctgccatcggctgtgccggctacaccatgagctcagtc
tacaccgctacacagtacaaccgctggaggagggttacggtgtacctgcccagcgctgcc
aattctcccaggactcggttcaggtggatccagccccacttcatccctggggcggacggt
tgggccttggacaacgtgctgctggcccctggctgcccctggatgtgctctggacacgga
ctctgtgacaacggatgctgtttgtgtgaccggggttatggcggggcccactgcgtgccc
ttggcccccctcccctccattttgagagacgacttcaacgagaacctggcggcggagcag
tggcccgaggtgtacggggctgagagggggactctcagtggggagcccctcaaatctggc
accgcactaatcttcaaaggggaaggtctgcgtatgttggtgtcaagggacatggactgc
accagcactctctacatccagttctccttcaagttcatcactaagggtgtcccagagcgc
tcccactcggtgctactacagtactctgtgaacggggggatcagttggctgttgttagat
gagttttacttccctacttccaccgatacgctgttcatccaccttcctctgcccaccagt
gcccagaccaacgctacccgcttcaggctctggcagccttacaacagcggtaaaaaagag
gaggtgtgggtgattgatgacctgatcatcgatggcagctcgctcaacaaccctcctgta
gtctctgacagctttgagggcggaccccaggattacaactggctcttctacccaggaggc
aacactggactctactgcccctaccagaagagtggcctggaggacgatgagtctgccatg
gtgtttgtctccagcgagttgggagaacattccattaccaccagagacattgatgtcaat
gaaaacaccgtcatacagtttgagatcaatgtgggctgcacggcagattcttcctcctct
aacccagtgagactggagttctccagggactttggggctacatggcatctcctggtgccc
ctgtgttcggggggcccccagccctcatccctatgctccacagagctgcaccccgccagc
gtctactaccccgggacaacacagggatggaggagggaggtcatccacttcggcaagctc
agactctgcggatccatccggttccgttggtaccagggcttctactctagcggttcatcc
ccccctacctgggctttggacagtgtgtacattggcccccagtgccaggacatgtgtaac
ggacacgggtcatgtgtgaggggtacacactgtgtgtgtgactcgggatactcaggacca
gactgctcccaacccgacacatccaaccctgacttcctcaaggaagactttgaaggaggg
gcggtggatgctgaccggtttaggctgctgagtggagggaaacctagcaggaaatgtggc
atcatgtccagtgggaaccacctgttcttcagcgaggacggccttcgcatgctggtcacc
aacgacatggacctttccaacgcaaggtttattcagttcttcctgcgtctgggctgtggt
aaggcctccccagacccccgctcccagcctgtcctgctccagttctctgtagacggggct
ctgacctggggcctgctgcaggacttcttcttctccaacagcagtaaccaggctcgcctc
gtggccctggagatccctctacgtgcccgtacctccgccacgcgcctacgctggtggcag
ccctctgagaatggacacttctatagtccatgggttattgaccaggtggtggtgggtggc
agtgccagtggctggggtcctttagaagacgacttctcctctatggacgggcgttcctgg
ctgctccaccccgggggtacccgcatgcccgtgtgtggttctgacggggcagccttcgct
ttcatagagaagtccaacacgcgctacgctgtcaccacagacatcagcctgggacaagat
gctttcatacagtttgatttctcagcttcatgctctgtcacaaactcctgctacgccatt
gagcttgagtattctctggacctgggtctgcactggcagcctctggtgcgtgactgtctc
cccaccagtcaagactgctcctcctacaccctacagagactgctggtggcagacatatac
aacaagtggggccgagtcactctgcccattcccacctacgccaggtctgcagctacgcgg
ttccgttggttccagcaggctccatttgacaagcagcagacctgggctctggacaacctc
tacatcggcgacggctgctccgacatgtgctccggacatggacgctgccagcagagctcc
tgtgtgtgtgacccagagtgggaaggcgagtactgtgatgagcctgtggcccccctgccc
tcccagctgaaggacagtttcagccgggccccctctcttagccactggcacctggtaacc
gggggaaagctcagcactgtgtgtggggccgtggcatctggggctgcactgcacttcagc
gggagttgcagtcgtcagctggtgacggtggatctgaacctgaccaacgcagagttcatc
cagttctactttatgtatggctgcatgaccccgccgagcaaccgcaaccagtgtgtacta
ctggagttcagtctgaatggtggaatcaactggatcctgttgacagagatcttttacgac
ctgtacagaaagcctggattcgtcaatgtactgctgccccatgcggcccgtcaggagggt
gtgcgtgtgcgctggtggcaaccgacccacgaggggtccgaccacagtgactgggcactg
gataacgtcctaatcgctggttccgacccacgggcacagatctctgacaccttcggaggg
gtggcgctgcctaaccacgagagagcgcccgctgatggtacccccacgggcaggataggc
ctgttgaatgagggagaggaggagagcacctcaggtatatacacaggggatctggacgag
accacaacatacaccaccacagtgagtgatcactggctgttcagtgaggactgtgcggtt
cagaggttctgtagctctccagatggagtcatggtgtgtggtaatgatgacggcagagag
gtgtatgcagtcacacatgacatcgtcccggacaaaggctgggtcatgcagttcaagatt
gtggtgggctgcagtgtgccggagcgccatgccgagcatcaggtccatgtccagtattct
gtggactttggtgtctcctggagatacctggtgccccagtgtctccctgctgacccctgc
tgtggaggacagatctcccagcccagtgtcttcttccctgcccagggttggaaaagggcc
gtctaccccctaaaggacagcctggcagacacggcggtgcgtttccggttctaccagcag
cacagtgatacccagtgggcagtggagaacttctacattgggccagcgtgtgacagccat
tgtgggggacatggagagtgtctggaccagcgatgtatctgtgaaccaggcttcaccgga
cccagctgctacgccagcactgcactcaagacatctctgaaggagcgttttgactgggag
gggctgccgggccctcagtggcaggtgttggaggggggtcgcccctgcactgattgtggg
gttctggtggaggggaccgctttgtactttgcaggagcagacgccaggcaggccgtcacc
gctgacctcgacctcagaggagccaagtttgtagagtactgggccaggataggaagtgaa
gacaacatgaccatgtgccatcgccctacctgtcgcaaagagggagtgctcctggactac
tccaaagacggaggtgtgtcctggaccctgcttcatgagatggactatctgaagtacgtg
tctgtgaggcgtgattacattgttttaccagagggggcgctgtctaacaccacacggctg
cggtggtggcagcccttctctgtctcctccggtctggcatcacccgggctggagcgtgct
cagtgggctgtagacaacatcctggtgggagggtctgacatcaacccctccaccctgctc
gacaccttcgatgacgagggtgtgtcccatgaggagagctggagcttctatcccaacgcg
gtgcgtacggctggattttgtggcaacccatccttccacctctactggcccaacaagaac
caggacaaaacacacaacatcctagccacccgagagcttatagtacagcctggatacatc
ctacagttcaagattgtggtgggctgtgaggcagacagctgtgaagaccaccattctgtc
ctgctgcagtacaggaaggatgccaggtctgactcatggcagctggtccagtcagagtgt
cttccctcctctgtgaacaacgtgggctgctctcccttcatgttccatgaatctaccatc
tacagtcctgtcaacagctctacctggaccagagtcactgtccagctgcctgaccacgtc
tcctcaggtgccacgcagttccgttggatccagaaggagggcgttggcgagcgtcacggc
tggggggtggaccacatgtacattggggaggcgtgcccagggctgtgtagtggtcatggt
tactgtactagcggagtggtctgtatctgtgacgagggacaccatggtgatgactgctcc
ctgtccggcagtgacctacccagctccataaaggataactttgagtcaggcagcatgtca
gaggagagctggcaactcatccagggtggcggggtgggaagtgggtgtggtcagctctct
ccccacgcccacggtgactcgctctacttcaacggttgtaagatgaggcaggctgtcacc
aagccactcgacctgacacgagccagtaagatcatgttcgtcctgcagataggtagtgtg
tcccagacagacagttgtaacacagccctggaccagcctgacacagtggacagagctgtg
ctgctacagtacactgtcaataatggagttagctggcacgtgatcgcccagcaccagccc
aaagacttcatcaaggcccagagagtgtcctacaacatcccactagaggcgagagttaaa
ggggtggagctgcggtggtggcagccgcgtcacgacggtgtgggacatgaccagtgggcg
ctggaccatgtggaagtagttctcactcgtaaacaaaactatatgatgaactttgccaga
cagaccggcctacgccactactacagccggaagaggcgggcactgctacaacatcgtgcc
taa
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