Salvelinus namaycush (lake trout): 120053484
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Entry
120053484 CDS
T07522
Name
(RefSeq) interferon regulatory factor 3-like
KO
K09447
interferon regulatory factor 7
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04620
Toll-like receptor signaling pathway
snh04621
NOD-like receptor signaling pathway
snh04622
RIG-I-like receptor signaling pathway
snh04623
Cytosolic DNA-sensing pathway
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120053484
04621 NOD-like receptor signaling pathway
120053484
04622 RIG-I-like receptor signaling pathway
120053484
04623 Cytosolic DNA-sensing pathway
120053484
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120053484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120053484
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
120053484
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
120053484
NCBI-ProteinID:
XP_038856537
UniProt:
A0A8U1BNU7
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Position
Sna9:complement(35904516..35917080)
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AA seq
416 aa
AA seq
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MQSYKPQFGDWLIEQVRTEQYTGLFFIDNNKFRVPWKHNSRKDCSEDDRKIFRAWAVVSG
KINEHRNEEAKWKTNFRSALNSLCRRFKMVEDHSKDSNDPHKVYLVINEYNYESPHIEEI
TLENYGIDCALTPTENTPPGMEHDILNFSNLTLNPLDLIQHTENSIPVHTHYPVPPVLVQ
QPYYQVNPDALLNLPAAHSSLWDLEITISYRGSEMRKTQVSGPRVQLHYQCNALEPNTQP
LCFPSTYGLPDHKQIEYTNCILGSVQRGLLLEVQNTGIYGYRQDKCHVFSSTSDPREAHP
EPRKMPQNEMVQLLSFQQYKNELIAFKENKRGSPDYTIHMCFGEKFPDGKPLEKKLIVVK
VVPLICRYFHEVAQEEGASSLQNDNISLQISHHNSLMELINATWPDGPQHAMGQYF
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctacaaacctcagttcggtgactggctgatagaacaggtgcggaccgagcaa
tacaccggtttgttctttattgacaacaataagttcagagtcccgtggaaacacaattct
aggaaggattgctccgaggacgaccgtaaaatattcagggcatgggcagtggtcagcggg
aaaatcaatgagcatcgcaatgaggaggcaaagtggaagaccaacttccgctctgcactg
aacagcctgtgcaggcgtttcaagatggtggaagaccactccaaggactcaaacgacccc
cataaagtctacctggtcatcaatgagtataactatgagagcccgcacatagaagaaatc
actctggagaactatggcattgactgtgctctcacccctacagaaaacactcccccaggc
atggagcatgatatactgaactttagcaacctaaccttgaaccccctagacctgatccaa
cacacagagaactctataccggtacacacacactacccagtgccaccagtcctagtacag
cagccatactaccaagtaaatccggatgccctgctcaacctgcctgccgcccactcatcc
ctctgggacttggagatcaccatctcctatagggggagcgagatgcgaaagacccaggtg
tcaggccccagggttcagctccactaccagtgtaatgctctcgagcccaacacccagccc
ctctgcttccccagcacatacgggctgccagaccacaaacagattgaatacaccaactgc
atcctaggaagcgttcaaaggggtcttctcctcgaggtacaaaacactggtatctatggt
taccggcaggacaagtgccacgtgttctccagtactagcgaccccagagaggcacaccct
gaacccaggaagatgccccaaaatgaaatggtacaactgttgagcttccagcagtacaaa
aatgagctgatagcgtttaaggagaacaagcgaggctctcctgactataccatccacatg
tgctttggcgagaagttccctgacggaaaacccctggagaagaaactcattgtcgtcaag
gtggttcccctgatctgtcgttacttccacgaggtggcccaggaggagggggcgtcgtcc
cttcagaatgacaacatcagcctgcagatctcccaccacaacagcctgatggagctcatc
aatgccacctggcccgatggcccacagcacgccatggggcagtacttctag
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