Salvelinus namaycush (lake trout): 120053809
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Entry
120053809 CDS
T07522
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04150
mTOR signaling pathway
snh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
120053809
04150 mTOR signaling pathway
120053809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120053809
Membrane trafficking [BR:
snh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
120053809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
SGL
EGF_LRP2
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
120053809
NCBI-ProteinID:
XP_038856997
UniProt:
A0A8U1BQD3
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Position
Sna9:complement(20628237..20707495)
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AA seq
1624 aa
AA seq
DB search
MELKLRAIAMDVFLVELLFYSSLLSLVNGSPLLLFANRRDVRLVDVEMGRPESAVVVSDL
EDAAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTGSLKEASGTRQTVVVSGLDSPDGLAC
DWLGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPR
IERAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEG
TLTHPFALTLSDETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGSDRQPDI
HTPCSDSNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRI
SLDLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTEAQTLVTTEI
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYW
TDWGEKPKIERANLDGMERLVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGS
NRMTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTNAIREIIIDQLPDLMGLKATR
VTEVSGTNGCVEDNGGCSHLCFHRPQGLRCDCPMGLELLSDMRMCVVPEAFLLFTNRADI
RSISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEF
GLDYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALNPANGYM
YWTEWGGKPRIARAHMDGSNIMTLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQG
LQREIVADDLPHPFGLTQYRDYIYWTDWNLRSIERADKRSGLNRTMVQGHLEYVMDILVF
HSSRQDGANDCSQNNGNCAHLCLASPAGSQCRCASHYILDSNSRNCSSPSSFLLFSQKAS
ISRMVLGEQSPDIILPIHVLRNVRAISYDPLDHLVYWVDGRQNIRRARDDGTQSSVVVST
TSTHLQQPDKQPHDLSLDTYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVV
NAEKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLK
RIESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLIGEKRTRIQGR
IAYLTSIHAVEDMDPTEFASHPCSHDNGGCSHICIAKGDGTPRCSCPMHLVLLPNLLICG
DPPTCSTEQFTCATGDIDCIPMAWRCDGVAECDDNSDEENCPVCSAIQFQCDKGQCVDAQ
LRCNGEPDCADNSDEQDCDTICLPNQFRCNNKQCILKKQQCDSYSDCADNSDELFCEFLT
PPSSDVQSPSHTSTIGPVIGIILSVFVMGGMYFVCQRVVCRRYKGPNGAFPHDYISGTSH
VPLNFIAPSSSQHGTFSGISCGKSMMSSVSLMGSSCSGAPLYDRNHVTGASSSSSSSTKG
AFYPQMLNPPPSPATDRSLYNAEIFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagctacgagcaattgcaatggacgtttttctcgtggaattactgttttat
agtagcttgctctctctagttaatggatcccccttgctgctgtttgccaaccggcgggat
gtgaggctggtggatgtggagatgggaaggccagagtcagcagtggtggtcagtgatctg
gaggatgctgctgctgtggacttcctctactctgaaggactcatcttctggaccgatgtc
agcgaggaggccatcaagcaaacctactacaatcagtccaccggctctctgaaagaggcc
tcggggacaaggcaaacggttgttgtgtcgggtctcgactcccctgacggactagcttgt
gattggctgggccgtaaactatactggaccgactcggagaccaatcgcattgaggtagcc
aacctggatggcacctctcgcaaggtgctattctggttggacctggaccagcccagggcc
atcgccctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgc
atcgagagggcagggatggacggaagcaacaggaagatcatcgtggaggtggacatctat
tggcccaatggcctcaccattgacctggacgaacagaaactgtactgggcagacgccaag
ctgagcttcatacacagagccaacctggacggctcctcacgggagactgtggtggagggc
accctcacccacccgtttgccctcaccctgtcagacgagactctctactggacagactgg
cagacccgctccatccacgcctgcaacaaacacactggagacaagaggagggagatactc
agtggaatctactcccccatggacatccaagtgctgggttcagatagacagccagacatc
cataccccatgcagcgacagcaatggaggctgctcccacttgtgcctgctgtcgcccatg
caacccttttacagctgtgcatgccccactggagtcaagctcaaggaggatgggaagacc
tgtcgcccaggtgcggagcaggttctactgctggccaggcggactgacctgaggaggatt
tctctggacctcccagatttcaccgacatcgttctgcaggtggacgacatccgccatgcc
atcgccatcgactatgaccctgtggatggatatgtgtactggacagacgacgaggttaaa
gccatccgccgctcccgcattgacggcaccgaggcccagaccctggtcaccacggagatc
aaccacccagatggcattgcggtggattgggtggcccggaatctttactggacggatacg
ggtactgaccgtattgaggttacaaggctgaacggaacctcgcgccgcattctgatctca
gagaacctggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactgg
acagactggggggagaagcctaagatagagcgtgctaacctggatggaatggaacgtctc
gtgctgctcaatacctcgctgggttggcccaacggtttagccatcgactatgaagcagga
aaactgtactggggcgatgccaagacggacaaaattgaagtgattgacgtggacggctcc
aacaggatgaccctgctggaggacaagctaccccacatctttggcttcacgctgctgggc
gactacatctactggacggactggcagaggaggagcatcgagagggtccacaagaccaac
gccatccgagagatcatcattgaccagctacctgatctcatgggactcaaggccaccaga
gtcactgaggtctccggcacaaacggctgtgtggaggataatggcggctgcagccacctg
tgtttccaccggccccagggcctgcgctgtgactgtcccatgggcctggagctcctcagt
gacatgaggatgtgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatc
cgctctatctccctcgggaccaactctaacgacgttgccatccctctcactggggtcaag
gaggcctccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagc
accaagaccatcagcagggccttcatgaacggcagctctgtggagcatgtgatcgagttt
gggctggactacccagaaggcatggcagtagactggatgggcaggaacgtgtactgggcc
gacacagggaccaaccgcatcgaggtggcccggctggatggacaataccgacaggtcctg
gtgtgtaaggacctggacaaccctcgctccctggcccttaaccctgccaatggctacatg
tattggacagagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaac
ataatgaccctagtggacaaagtgggcagagccaacggcctcaccatcgactacatcgac
caaagactctactggaccgacctggacacctgtatgatagagtcaaccaacatgcaaggt
ctgcagagggagatagtggctgacgacctccctcatccgttcggtctgacccagtaccgg
gactacatctactggacagactggaacctgcgcagcatcgagcgggccgacaagcgctct
gggctgaaccgcaccatggtccagggacacctggagtacgtcatggacatcttggtcttc
cactcgtctcgccaggacggtgccaatgactgctcccagaacaacggcaactgtgcccac
ctgtgcctggcgtcgcccgccggctcccagtgccgctgtgcgtcccactacatcctggac
tcaaacagcaggaactgcagctccccctctagcttcctcctgttcagccagaaggcctca
atcagccgcatggttctgggtgagcagagccccgacatcatccttcccatccacgtcctc
cgcaacgtccgggccatcagctacgaccccctagaccacctggtctactgggtggacggg
cggcagaacatcaggagggcccgcgacgatggcacacaatcgtcagtggtggtgtccacc
acttccacccacctgcagcagcctgacaaacagccccacgacctgagcctggacacctac
agccgtactgtctactggacttgtgaggccaccaataccatcaacctccagcgcctggac
ggagacgccgtgggcgtggtgctgcgagatgaacatgacaaacccagagccattgtagtc
aacgcagaaaaagggtatatgtatttcacgaccatgcaggatcgctctgctaagatcgag
ggagcgtctctggatgggacggagagggagtctttgttcaccacgggcctgatccggcct
gtagccctggccctggacaacaagctggggaaactcttctgggtggacgctgacttgaaa
cgcattgagagcagtgacctcactggagccaatcggatcgtcctccaggattctaacatc
ctgcagcccatgggtctgacagtgctgggggagcatctgtactggatcgacagacagcag
cagatgatcgagagggtggacaagctgattggggagaagaggacccgtatccagggccgc
attgcctacctcaccagcattcacgctgtggaagacatggaccctacagagtttgcttct
catccctgttcccatgacaacggaggctgctcacacatctgcatagccaaaggagacggg
acacctcgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcatctgtgga
gacccacccacctgttccacagagcagttcacctgtgccacgggcgacattgactgcatc
cccatggcatggcgctgtgacggcgtcgctgagtgtgatgacaacagtgacgaggagaac
tgccccgtgtgctcggcaatccagttccagtgtgacaagggccagtgtgtggatgctcag
ctacgctgcaacggagagccagactgcgcagacaactccgatgaacaggactgtgacacc
atatgcctgcccaaccagttccgctgcaacaacaagcagtgcatcctgaagaaacagcag
tgtgactcctacagtgactgtgctgacaactctgacgagctcttctgtgaattcctcact
cccccgtcaagtgacgttcaatcaccatctcacaccagcaccatcggcccagtcattggc
atcatcctgtcagtgtttgtgatgggagggatgtactttgtgtgccagcgggtggtgtgc
cgccgttacaaaggtcccaacggagccttcccccatgattacatcagtggcacctcacac
gtacccctcaacttcatcgcccccagcagctcacagcacggaaccttctcaggtatctcg
tgtgggaagtctatgatgagttctgtcagtctgatggggagcagctgtagtggggcacca
ctctatgacaggaaccatgtgacaggggcctcctcaagcagctcctccagcactaaggga
gccttttatccacagatgctcaacccgcctccctctccagccacggatcgctccctgtat
aatgcagagatcttctactcctctaacagtccctccaccaccaggtcttacaggccttat
ctaatgcgcggtgtggcaccccccaccaccccatgcagcactgacgtctgtgacagcgac
tacaccacaagtcgttggaagagcaacaagtactacatggacctaaactcagactctgac
ccctaccctcctccccccactccccggagccagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttactttcacctctgtcccccacccccatcaccatgc
actgactcttcatga
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integrated database retrieval system
