Salvelinus namaycush (lake trout): 120053876
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Entry
120053876 CDS
T07522
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120053876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120053876
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120053876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
PROPPIN
Frtz
DUF7165
DHHW
Motif
Other DBs
NCBI-GeneID:
120053876
NCBI-ProteinID:
XP_038857085
UniProt:
A0A8U1BXP9
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Position
Sna9:23825432..23834322
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AA seq
685 aa
AA seq
DB search
MGEFKVHRVRFFDYMPAAIRAMAFNAHTERLALGRMDGSVEIFNFADHYFQEKVIPGKDS
RSIEALCWVGGRLFSAGLNGEVTEYDLESLRPKYSLEAYGGPIWTITSNSQGAHLAIGCE
DGTVKLFEVLEESIQFERNLDRQKGRILSISWHPSGAQIAAGMMDMIRVFDVPTGRAVQR
LLVDRGFGGSKSRETVVWSVVFLSDFTIISGDSAGKVQVWDGHTGTLVKTHLVTKWDVLA
LSVSKDESSVVAGTSEGTVIQFQFIAPTLQQQDKEWVRTRTFKNHTHDVRALAEIETAIV
SGGMDTQLVVRPLLEKFDERSHASALRKIHFPHRNLVFCAKKAGLLLFQFPGQLELWRLG
ESDGHGKPGDSLPLKRKPEKLLHLKRKGEDHICCSALSSCGGWLAYSTMSSVRLYRLQTD
NNDISITKVPKLPKVLRSAHQLCFSSDSSKLFAASSQSSVLVIALSQSECKYVHTLKPKS
GSRQPIHLMTNSVDGKWLSTANSDCEIHVYNVQKLKLHCIVPVYGSCPSAMGIHPTTNNL
TMVHADQQIFEYSIVEKQYTDWSRKLQKQGLHNLWLDRDTPVTHVTFNPKNPEQILLHDM
HMFCIIDQSLPLPDQKTQFYNQMTLRSLSEQGRPSHLHAFKICKTFQDLLSVSLLDDQSL
VMVERPLLAITSQLPAPVRQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggggaatttaaagtgcaccgggttcgatttttcgactacatgccagctgccatcaga
gctatggcattcaatgcccacacagagagattggccctgggacgaatggatgggagtgtg
gagattttcaacttcgcagaccactatttccaggaaaaggttattccagggaaggactcc
cggtcaatcgaggccctgtgttgggttggaggacgcctgttcagtgctggcctaaatgga
gaggtcacagaatatgatctggaaagcctgagacccaagtactccctggaggcatatggg
ggccccatttggaccatcaccagcaattctcagggggcacacttagcaatcggatgtgaa
gatgggacagtgaaattgtttgaggtacttgaagagagcattcagtttgagcgcaatctg
gacagacagaaaggtcgcatcttatccatctcctggcacccctctggcgcacagattgct
gctggcatgatggacatgatccgtgtctttgatgtcccgacaggtcgtgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcgggagactgtagtctggagtgta
gtcttcctgtcagactttactatcatcagcggtgactctgctgggaaggtccaagtctgg
gacggacacaccggcacgctcgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctccaaggatgagagcagtgtggtggcagggacgtcagagggtactgtgatc
cagttccagttcattgctcctactctgcagcagcaggacaaggagtgggtcagaaccagg
accttcaagaaccacacgcatgatgtcagagccctggctgagatcgagaccgccatcgtc
tctggaggtatggatacccagcttgtagtgagacccctcttggagaagtttgatgagagg
tcacatgcttcggcacttcgcaagatccactttccccatcggaatctagtattttgtgca
aagaaggcagggctactgctcttccagttccctggccagctggagctgtggagactggga
gagagtgatggacatggcaagccaggagacagcttgcctctgaagaggaaacctgagaaa
ctcctccatctcaagagaaagggtgaggatcatatctgctgcagtgctctgtcctcctgt
ggaggatggctagcatactccaccatgtccagtgtacgtctctacaggctgcagacggac
aataacgacatcagtataaccaaggtacccaagcttccaaaggtcctgcgctctgctcac
cagctgtgtttctcttcagactcctccaaactgtttgctgcttccagccaatcatcagtc
ctcgttattgcccttagccaatctgagtgcaagtatgtgcacaccctcaagcctaagtca
gggtccagacagcccattcacttaatgactaacagtgtggatgggaagtggctgtcgaca
gcaaatagtgactgtgagatccacgtctacaatgtacagaaactaaagctccactgtata
gtacctgtgtatggttcctgtcccagtgccatggggatccaccccaccaccaacaacctg
accatggtgcacgctgaccaacagatatttgagtactccatagtggagaagcagtacaca
gactggagccgaaagcttcagaagcaggggctccacaacttgtggttggaccgggacaca
cccgtcacccacgtgaccttcaaccctaaaaatcctgaacagatcctcttgcacgacatg
cacatgttctgcatcatcgaccaaagtctgcccctccctgaccagaagacgcagttctac
aatcagatgaccctcagaagcctatcagagcaggggaggcccagtcacctccatgctttc
aaaatatgtaaaaccttccaggacttgctttctgtgagtctgctggatgaccagtctctg
gtgatggtggagcgccccctcctggccatcacatcccagctacctgctcccgtcagacag
aaaaagtttgctacataa
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