Salvelinus namaycush (lake trout): 120053910
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Entry
120053910 CDS
T07522
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120053910 (ctcf)
03036 Chromosome and associated proteins [BR:
snh03036
]
120053910 (ctcf)
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120053910 (ctcf)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120053910 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
DUF7128
Motif
Other DBs
NCBI-GeneID:
120053910
NCBI-ProteinID:
XP_038857143
UniProt:
A0A8U1EL37
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All DBs
Position
Sna9:complement(26949162..26956295)
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AA seq
798 aa
AA seq
DB search
MKYSFLVQVLPMDGGPTDVVVEAKDSITYEGEEVVADLLQQAAEGVMDQQPVGEGGLDPQ
ELVEGVNVEMMVMDSLDPALLQMKTEVMDAPVVTAHEATVTTVDETQIITLQVVNLEEQQ
LGSLGELQLVQVPVSAVPVTQATVEELQGTFVDATAMPKDGNPMICHTLPLPEGFQVVKV
GANGEVETVEQDELQHQEEQQVQPEEEEEGLHCEPQPEDPQWTTDPDYQPPAKKTAKKAK
KSKLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTF
QCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQD
CDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSY
ASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI
ARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQ
ERHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTFTR
RNTMARHAENCNGDPTEGENGTPPKRGRGGRKRKMRSRKDDDDDSEDNADPELDDIDEED
EDAEEALLEEEEEEEMELEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPASPAKASKAAP
KGKAAAAAAIIQVEDENTGVIENIIVKNEPEAEQAAIEVVVEQSEEAGAGVETVELPVAE
AAPNGDLTPEMILSMMDR
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctggtgcaggtattaccgatggacggcggaccaaccgacgttgtg
gttgaggccaaggacagcatcacctatgagggggaggaggtggtggcagacctgctccag
caagcagcagagggggtaatggaccagcagcccgtgggagaggggggcctggatccccag
gagctggtggagggagtcaatgtggagatgatggtaatggattccctggacccggccctg
ctgcagatgaagactgaggttatggacgcccctgtggtcacagcccacgaggccacagtc
accacagtggatgagacccagatcatcactctgcaggttgtcaatttggaggagcagcag
cttggaagccttggggagctacagctggtccaggtgcctgtctcggctgtgcctgtaaca
caggccactgtagaggagctacagggcaccttcgtggacgccacggccatgcccaaagat
ggaaaccctatgatctgccacaccctgcccctgccagagggcttccaggtggtgaaggtg
ggtgcgaatggtgaggtggagacagtggagcaggatgagctccagcaccaggaggagcag
caggtccagcctgaggaggaggaagaggggctgcactgcgagccccagcctgaagaccca
cagtggaccacagacccagactaccaacccccggccaagaagactgccaagaaagcaaag
aagagcaagctgcgctacaacactgagggggacaaagacaacatggacgtgtctgtctat
gactttgaggaggagcagcaggaggggatgctctctgaggtcaacgcagagaaggtggtg
ggcaacatgaagccccccaaacccaccaagatcaagaagaagggtgtgaagaaaacattc
cagtgtgagctgtgtagctacacctgtccccgccgctccaacctggaccgacacatgaag
agccacacggacgagaggccccacaagtgccatctgtgtggaagggccttcaggaccgtt
accctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgtcaagat
tgtgacatggcctttgtgaccagcggagagctggtccgacatcgtcgctacaagcacact
catgagaaacccttcaagtgctccatgtgtgactatgccagtgtggaggtgagcaagcta
aagcgccacatccgttcccacactggggagcgtccgttccagtgcagcctgtgcagctac
gccagcagagacacctacaagctgaagagacacatgaggacacactcaggagagaagccg
tatgaatgctacatctgccacgcccgtttcacccagagtggaaccatgaagatgcacatc
ctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacacagtcatc
gcccgcaagagtgacctgggcgtccatctgcgtaagcagcactcgttcattgagcaggga
cggaaatgccgttactgtgatgcggtgttccacgagcgctatgctctcatccagcaccag
aagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgcagacaa
gagcgtcacatgctgatgcacaggcgcacacacacaggagagaagccttacgcctgtagc
cagtgtgaaaagaccttccgccagaagcagctcctggacatgcacttccggcgctaccac
gaccccaacttcgtgcctactgcctttgtgtgcaccaagtgtggcaagaccttcacccgc
aggaacaccatggccagacatgcagagaactgtaacggggatcctactgaaggagagaac
ggaaccccacccaagagaggacggggtgggaggaagaggaagatgcgctcaaggaaggac
gatgatgacgatagtgaggacaatgctgatcctgagctggatgacattgatgaagaggat
gaggatgccgaagaggcactgctggaggaagaggaggaggaggagatggagttggagcag
gctccacccaccaagcctatccccgcccctgtggagccgcccgtcaagaggaaacgtggt
agaccccccaagaatgcgcccaaacctgcctcacctgccaaagctagcaaggctgcccct
aagggcaaagctgctgcagcagcagccatcatccaggtggaggatgagaatacaggtgtc
atagagaacatcatagtgaagaatgagccagaggctgagcaggctgccatagaggtggtg
gtggagcagtcggaggaggcaggagcaggggtggagacagtggagctgcctgtagcagag
gctgcccccaacggagatctcacccctgagatgatcctcagcatgatggaccggtga
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