Salvelinus namaycush (lake trout): 120053917
Help
Entry
120053917 CDS
T07522
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120053917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120053917
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120053917
mRNA degradation factors
5'-3' decay
Decapping complex
120053917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_HPS5
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WDR55
NBCH_WD40
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
120053917
NCBI-ProteinID:
XP_038857157
UniProt:
A0A8U1EQV4
LinkDB
All DBs
Position
Sna9:27200879..27241839
Genome browser
AA seq
1402 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVVASPCENQRKTSFNGELNGLRPGAGKRSSMD
ESTGRNSENMNAQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGNPLSCLLFCDNHKKQDPD
VPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLSAECLILS
DVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTEVLPPDEES
ESMTAEGNQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHSDSNDGFGF
SDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPADFMSPTGAAAMPKLMTPDAFMTPS
ASVPASPGSSASSLKMVTAMTSNSDSGARGGEELTQNPKMSMESSSSSSLTLSASTSSPR
ASSLLISGLGDNMPVLPSPNPPLSMDPQVIEPMLIQHASPTLARSPDVISSASTAMSQDI
PEIASETLQRSLGGVSGAESRDSLPALHTDSMASAASALHHLSPRNRNNSDHGHLTLELG
AGAVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNNTSHPWPAAPDITRETRNSLRDN
GLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGARSS
QRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEHHNHHQMNPEVQEELLMLLRN
QQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILAEGQNRN
QQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAQMNNTIAAKLTA
VEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQ
INDSFKQGTHEYIQQLETHVKSRKQREQEGQDPMIGQLQQMIDTFQNSTDQLATTVTASV
RSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAAGTPVPT
PHLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHPCPLIQP
VLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLFQFLQQD
PHSPLSKRARRLVMMLQGLVNH
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtagtcgcatctccatgtgagaaccaaagaaaaaca
tctttcaatggtgaattgaatggacttcgaccgggagctggcaaaaggtcatccatggat
gaatccacaggccgtaattcggagaacatgaacgcccaagagtgccagatcatctgcctc
tctggggatgatggctccacttgcattcccatcacatcaaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaaatacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcgtatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgcggagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgacgaagctggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcccttcatcctcgag
gacaatgaagagaaccctgaggatgctagccagaccttggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggcgttataaccataaaaggacatacagagcgtataagtgaaggt
gccctgtctccggatggcacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagatgtctgcatgagtggcagccccac
aatgggaaccccctctcctgcctgctgttctgtgacaaccacaagaaacaggacccagat
gttccattctggcgctttctgattactggagctgatcagaaccaggagctgaagatgtgg
tgcacagtgtcatggacctgcctgcagaccatcaggttctctccagacccgttcaactcc
tcagtcctgcccagtctaaaggccagcctggacctctctgcagaatgcctcatcctcagc
gacgtacagagaaaggtgttgtatgtgatggagttgttgcaggaccaggagaagggccat
gccagcttcacagccgtgtccgagttcctgcttacacaccctgtactcagctttggtgtt
caggatgtcagccgcagccgcctgcgccacacagaggtcctccccccagatgaggagagc
gagagtatgactgcagagggcaaccagggcccaatggaatccagagctgggatacaaata
aagctatactgtgtccacacaaagtcccttcaagatgtgcagatctggttccagccaaac
cttgggtctggctcgtccttatttctgcctcactcagactcaaacgacggctttggtttt
tcggatcacttgacagacatgagcatggaaggtttgagctctgacaaggagtccggatgt
ggctcccaaaatgatctccgtaagattcccgcccttcctgctcctgctgacttcatgtcc
cccactggcgccgccgctatgcccaagctcatgacccctgacgccttcatgacccccagt
gcttcagtcccagcctccccaggcagcagtgccagcagcctgaaaatggtgacagccatg
accagcaactctgacagtggcgccaggggaggagaggagctgacccagaaccccaagatg
tctatggagagcagcagcagtagcagtctgactctcagtgcgagcaccagcagccccaga
gccagctcccttctcatctcaggcctaggggacaacatgccggtgcttccctctccaaac
ccgcccctctcgatggacccacaggtcattgagcctatgctgattcagcatgcctctccc
accctggcccgctctccagacgtcatctcatctgcctccacggccatgtcacaggacatc
cctgagatcgcctctgagacgctgcagcgaagcctggggggtgtgtctggagctgaatcc
cgagactctctcccagccctccacacagacagcatggcttctgcagcctcagcccttcac
cacctctctccacggaaccggaacaactctgaccacggccacctgaccctagagctgggt
gctggagcagtggaggcggagcagaggctcagtaacactccttcactactggagaatgcc
ctgtcacaggagaatgctgctgcagccgccgctgcctcctgctccgacaacaacacaagc
cacccctggcctgcagctcccgacatcacacgggaaacgcgcaacagcctgcgggacaac
ggcctaggagactgctcaagggaggaaatgaaggacagacacatgtcctctccataccac
agacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaacagagtgac
catgatgacgaggtggccagtctagcgtcgtcctccgggaactgtggagccaggtcgtct
caaagactgccagtgaaggagtggaagagctctcccagaggctcccctaaactcaagagg
aagagtaaaaaagatgatggggatgcatctcatgcctctcagtccaggcagcctgagcat
cataatcatcatcagatgaaccctgaggtgcaggaagagctgctgatgctgctgcgtaac
cagcagagggagctagcggatctccgtcagagtcagctagagctgctgcagagagtgacg
ggccacatggacgcagtgcagagctctgtcatagcccatgtggagcacgtcatggtcagc
cagcaggagcacgaacagaggagaatggagagaatcctagcagagggacagaaccgtaac
cagcaactccaggagcatctctcccagcagctggctcaaactctcaacaacaccctgtgt
aaccgtctagacaagactctccgagaggagatgaagaaaaccgttcctcccactattatc
aagagtctcgagcctgttactgcccagatgaataacaccatcgctgctaagctgacggct
gtggaggcagcactgaaggagaacgtcagcaaagtcgtcaagtcaaagaacaccacagat
gcaatcggccgggcagctgctgaggcaatgcaggggcctatccaggctgcctacaaggat
gcgttccagagcattgtgctgcctgtgtttgagaggggctgccagtctatgttccagcag
atcaatgacagcttcaagcagggaacacatgagtatatccagcaactggagacccatgtg
aagagcaggaagcagcgtgagcaggagggccaggaccctatgattggccagctgcagcag
atgattgacacgttccagaattctacagatcagctggccaccactgtcacagcaagtgtc
cgctcggaggtccagcaccagctcaacatgacggtgggaaacctgcaggaatcaatcctg
acccaggtgcagcgcatagtgaagggtgaggtgagcatggccatgaaggagcagcaggca
gctgtgacctccagcatcatgcaggccatgcgctctgctgcaggcacgcccgtccctacc
ccacacctagactaccaggcccagcaggccaacatactgcagctgctgcagcagggacag
ctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctgtatgtg
tgtgagaccatcgactcccagcaggtgtttggccagcatccctgccccctgatccagcca
gtgctgctgtccctcatacagcagctatccactaacctggccacacgctctgagctcaag
atcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacgagagac
cacatgagtactgtgctgtcccaggtccgacagaaactgttccagttcctgcaacaggac
ccacacagtcctcttagcaagagagcccggcgcctggtgatgatgcttcagggcctggtc
aatcactag
DBGET
integrated database retrieval system
