Salvelinus namaycush (lake trout): 120054032
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Entry
120054032 CDS
T07522
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120054032 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120054032 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120054032 (abca7)
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120054032 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
120054032
NCBI-ProteinID:
XP_038857319
UniProt:
A0A8U1EGL3
LinkDB
All DBs
Position
Sna9:15310228..15353001
Genome browser
AA seq
2342 aa
AA seq
DB search
MGIGTQLLLLLWKNITYRRRNKVQLIIELVWPLFLFLILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWVQGIICNINNPCFHNPTQGETPGRVGNFDNSILSRLLVDSQTILSYSGNQT
AFSGFQDLLDTIRRLGERPGAWPNLPVGEYLRANQTFSNFLLTNGSLSPSALDQLFRARL
NFQVVSLAGTGVMLKDIVCNATVLSQFLTVDQEDSMAELQSQLCAIPADTLQQAEQLFLS
QLDFSKFFTRDRLRANAGDLRVISQAVTSVSKELAVLMDDLSSLASFRELNSELRLLSPE
NRSTLPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDNDMDKDNVTT
PYCKSLIQSLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVRDVMKEVNKTFQDLQILEEL
NGAWMEVAPGIKTYMESSVEIQLLQDLLRRPEVAVLVNLQLENTSWTAKRIARFLSTPNE
PRKEGAPPTWLDVYSDLNNTITTLAQVTQCFSLNKLEGAATEGQMIDRALELLEEREFWA
GIVFLLPNTSLPGLPPHVTYKIRMDIDDVARTNKIKDRFWDPGPAADPFSDMRYIWGGFV
YVQDLVERAVARVLSGVELYTGLYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
IIKGVVYEKEARLKETMRIMGLGTGQLWVSWFISSLVPFLVSAGLLIALLKWGDILPYSN
PAVVFFFLTAFATATIMQCFLISTFFSRANLAAACGGLIYFALYLPYVLCVAWRDHLTTT
HRVLASLFSPVAFGFGCEYFSQYEEQGVGIQWFNLHSSPMEGDTYNFTTSIIMLHIDACI
YALATWYIEAVFPGEYGVPRPWNFVFSLNYWGGIPLEAGMPIPPAPRGQGGDRIEADPSH
LILGVAIRNLVKIYKQGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTA
GTVYIKGMDIRTDMDIIRKTLGVCPQHNVLFDILTVEEHVWFYGRLKGLSGDEVRKELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDCTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKAKLGMGYYLTVVKKEG
LDTRTPSSASATKLPPATKDSDSSMSDDTGLGSDVSGSDLAALLTLAQRHIPGARLVEDV
GREAVINLPQKSAEDSSLAIFLTELDRRQADLGITSYGLSDTTLEEIFLRVAEETGVDVD
PEDSPGQADTPHGQGQGQGLSGEPSEDPEPQETDLLSGDGHGGVPLTGWGLTWQQLRALF
IKRWLYALRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQPWMYGEQYTFFSN
DAPGDPAIQNLLDALLDRPGFGTKCMENSTDPQCLQEEEGMFMRPQILYSTWQLFNRGNW
TADKPSPGCECSSEEVRRMLPECPEGAGGIPPPQVQRLTGDILQNMTGRNISDYLVKTYP
QIMKKSLTSATKKWINEFRYGGFSLGGRGTQAVPQAYQMEDSVMSIRSRYKVAQNSSLDQ
LLGRLPEFLGGLNSQNNVKVWYNNKGWHAMASFVNVMNNGLLRASLPPGPERMKYGITVY
NHPLNLTKEQLTEIAMMTTSVDVLVSICVIFSMSFVPASFVLFLIEERVSKAKHLQFVSG
VRPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSETNLPALVLLLLLYGWSITPL
MYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDQHLNDINKILKKVFLIFPH
FCLGRGLIDMAKNQAMSDAFQRLGAKQTLDPLEWDFVGKNLFAMAVEGVVFFLFTILLQY
KFFVNCRPCSEPELPPLGPEDEDIARERERVKSGKAQADILTMMDLSKVYKAGKKPAVDR
LCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEAFLSHHSVLTEMERVHQLMGYC
PQFDAICDLLTGREHLEFYARLRGVPEESVAKVAQWGVKKLGLTQYAEREAGGYSGGNKR
KLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVIKEGRAVVLTSHSMEECEALC
TRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLLGTKPPEDPCPVDTYIKGSFPGIELK
ERHQNVLQYQLPSHSCSLARVFDVLSNNHEELGIADYSVSQTTLDQVFVNFAKEQSDDDL
LREVTVNGGTPAPQPRRAAQPTQPGQTAKPAQTTKPPQSVKSSDGRPRETKPNGVTDSGM
AMISRPQERPQSSRGESRRELSSRRSSKESSANGSKGTRETSGNKDPTSLFLVGSSTQDS
SV
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgggactcagctcttgctactgctctggaagaacatcacttaccgcaggagg
aacaaggtccagttgattatcgagctggtctggcctctgttcctcttcctcatcctcatc
tcagtgcgtcactctcatcctccctacaaacagagccaatgtcatttccccaacaaggca
cttccctcagcaggcaccctgccatgggttcaggggatcatctgcaacatcaacaacccc
tgcttccacaaccccactcagggggagaccccagggcgggtgggcaactttgacaactcc
atactctctcgactcttagtggactcgcagacaatcctgtcctacagtggcaaccagaca
gccttctctggctttcaggaccttctagatactatacggagacttggagagaggccaggc
gcctggccaaatcttcctgtgggagaatacctgcgagccaatcagaccttctccaacttt
ctcctgaccaatggcagcctgtctccctctgccctagaccagctgttcagggctcgcctg
aactttcaggtggtgtctctggcaggcactggggtgatgctgaaggacattgtgtgcaat
gccactgtgctgagccagttcctcactgtagatcaagaggattctatggcggagctgcag
agccagctctgtgccatcccagccgacaccctgcagcaagcagagcagctcttcctctcc
cagctggacttcagcaagttctttacgagagacagactgagggccaacgccggtgacctc
cgggtcatcagtcaagcggtcacctccgtgtccaaggagttggcagtactcatggatgac
ctgtcctctctcgctagctttagggagttgaactcggagctgcgtctgctctcgccagag
aaccgttcgaccctgccacgggagagcttcagggccttctccaggattatgtgtggccac
cctgaggtgggcggcgagaggatcccttcactcaactggtacgaggacaacgacatcaag
tccttcctgggcaagaacggcaccgaggacaacgacatggacaaggacaacgtcaccacc
ccgtactgtaaaagcttgatccagagcctggagtccaacccactgtctcgcatcgtgtgg
cgagggatcaagcccctgtttattggcaaactgctgtacacaccagacacccctgccgta
cgcgatgtcatgaaagaggtgaacaagaccttccaggacctgcagatcctagaggagctg
aatggtgcctggatggaggtggcacctggtatcaagacctacatggagagtagtgtggag
atacagctgctgcaggatctgctgaggcggccggaggtggccgtgttggttaatctgcag
ctggagaacacttcctggacagccaagcgcattgcccgcttcttgtccacgcccaatgaa
cccaggaaagaaggagcgccccctacctggctggacgtgtactccgacctgaacaacacc
atcaccactctggctcaagttacccagtgtttctccctgaacaagctggagggtgctgcc
acagagggacagatgattgacagggccttggagctgctggaagagagagagttctgggct
gggatagtgttcctccttcccaacacgtctttacccggtctgccccctcatgtcacctac
aagatccgcatggacatcgacgatgtcgcacgcaccaacaagatcaaggacaggttctgg
gacccgggcccagcagcggaccccttcagtgacatgcgctacatctgggggggctttgtg
tacgtacaggacctggtggagagagctgtggcccgtgtgctgagtggtgtggagctgtac
actggcctctacatccagcagatgccctacccctgctacgtggatgacgttttcctacgc
gtgctgaaccgctcgctgcccctattcatgacgctggcgtggatctactcggtggccatg
atcatcaagggcgtggtgtacgaaaaggaggcgcggctcaaggagaccatgaggatcatg
gggcttggtacaggccagctgtgggtcagctggttcatcagcagcctggtgcccttcctg
gtcagcgccggcctcctcattgctctgctcaagtggggggacatcctgccctacagcaac
ccggctgtggtgttcttcttcctgacggccttcgctacggccaccatcatgcagtgtttc
ctcatcagcaccttcttctcccgggccaacctggcagccgcctgcggaggcctcatctac
ttcgccctctacctgccatatgtgctgtgtgtggcctggagagaccacctcaccaccaca
caccgtgtcctagcaagtctgttttctcctgtggcctttggctttggctgtgagtatttc
tcccagtacgaggaacaaggagtgggcatacagtggttcaacctgcactccagcccaatg
gagggagacacctacaatttcaccacttccataatcatgctgcatatcgatgcatgtatc
tacgctctggccacctggtacattgaagctgttttcccaggtgaatatggggtccccagg
ccatggaacttcgtgttcagtttgaactattggggaggaattcctctagaggccggcatg
cccatccctccggctcccaggggacagggaggagatcgcatcgaagccgacccctctcac
ctcatactgggtgtggccatccgcaacctggtcaaaatctacaagcaaggtgccaagctg
gcggtcaaccacctcaatctcaagttctatgaagggcagatcacctctttcctggggcac
aacggtgctggcaaaacaaccaccatgtctatcctgacgggtctgtttccccccacggct
gggactgtgtacattaagggcatggacatccgcactgacatggacatcatcaggaagacc
ctgggagtgtgtcctcagcacaatgtcctttttgacattctgaccgtagaggagcatgtg
tggttctatggtcgtctgaagggcctatcaggcgatgaggtgaggaaggagttggacact
ctcctggaggatgtgggcctgctgcacaaacgccacgaacagaccaggaacctgtctggt
ggtatgcagaggaagctgtcggtggccatagcatttgtggggggttcgaaggtggtggtc
ctggatgagcccacagctggggtggacccctactcccgtcgaggcatttgggacctgctg
ctcaagtaccgcaaagattgcaccatcatcctctccacccactacatggatgaggctgac
cttctcggagaccgcatagccatcatctcccaggggaagctgtgctgctgcggctccccc
ctcttcctcaaggccaagctggggatgggctactacctcaccgtcgtcaagaaggaggga
ctggatactcgaacccccagtagtgccagcgctaccaaactgccccctgccacaaaggac
agcgactcctccatgagtgacgacacaggtctgggcagtgatgttagcggctcagacctg
gctgccctgttgaccctggcacagcgtcacatccccggggcgcggctggtggaggacgtg
gggcgtgaggcggtcatcaacctgccccagaagtcggcagaggacagcagtctggccatc
ttcctcacagagcttgacaggaggcaggctgatctgggcatcaccagctacggcctgtct
gacaccaccctggaggagatctttctgagagtggctgaggagacaggggtggacgtggac
ccagaggacagcccaggacaagccgacacaccccatgggcagggtcaaggacagggcttg
tctggagagccatctgaggatccagagccccaggagacagacctgctgagtggggatggc
catggcggtgtccctctaaccggttggggtttgacgtggcagcagttgcgtgcgctcttc
atcaagaggtggctgtatgccctccgcagtcgcaggggctttttcgctcagatcgtgctg
cctgctgtgtttgtgttgatcgctctccttttcagcctcatcgtccctccgttcggaaag
tacccctcgctccagctacagccctggatgtacggggaacagtacaccttcttcagcaac
gatgcccctggggatcctgccattcagaatctgctggatgcccttctggaccggcctgga
tttggaaccaagtgcatggaaaacagcacggatcctcagtgtttgcaggaggaggaaggc
atgttcatgaggccccagattctctactccacctggcagctcttcaacaggggcaactgg
actgcagacaagccatctcctggctgtgagtgcagctctgaggaggtccgcaggatgcta
ccagaatgccccgaaggagccggaggcatcccccctccacaggtccagagattgacaggg
gatatcctgcagaatatgaccggccgcaatatctcggactacctggtcaagacttaccct
cagataatgaagaaaagcctaacttcagccactaagaagtggatcaatgaattcagatat
gggggcttctctctggggggcagaggtactcaggctgtcccacaggcctaccaaatggag
gactcagtcatgtctatacgatcacgttacaaagtggcacagaatagctcattggatcag
ctcctgggtcgcctaccagagtttctgggtggactgaatagtcagaacaatgttaaggtg
tggtataacaacaagggttggcacgccatggcatcgtttgtcaatgtcatgaacaatggc
ctgctccgtgccagcctgcccccagggccagagcgaatgaagtatggcataaccgtctac
aaccaccctctcaacctcaccaaggaacagctcactgaaattgccatgatgaccacctca
gtagatgttctggtgtccatctgtgtgatcttctccatgtcctttgtgccggccagcttt
gtgctgtttctcatcgaggagagggtcagcaaagccaagcaccttcagtttgtcagcgga
gtccggcccattctctactggctggctaacttcacctgggacatgctgaactatacagtc
ccggccactatggtggtcctgatcttcatttgcttccagcagcagtcctatgtgtctgaa
accaacctccctgctctggtcctgttgctcttgctttatggctggtctatcactcctctc
atgtatccagcctccttcctgttcagtgtccccagcactgcttatgttgtcctcacctca
atcaacctcttcatcggcatcaacggcagcatagccacctttgtcttggagctgttcgta
gatcagcacttgaacgatatcaacaagatcctaaagaaagtcttcctgatcttcccccac
ttctgtctgggtcgaggcctcatcgacatggctaagaaccaggctatgtcggacgctttc
cagagactgggcgcaaagcagaccctggaccccctggaatgggactttgtggggaagaac
ttgtttgccatggctgtggagggtgttgtgttctttctcttcacaatactgctacagtac
aaattctttgtcaactgcaggccctgctctgagcctgagttgccgcctcttggcccggag
gacgaggacatcgccagggagagagagagagtgaagagtgggaaagcccaagccgatata
ctcaccatgatggacctgagtaaggtgtacaaagctggcaagaagccagcagtagatcgt
ctgtgtctgggtattcctcgtggagagtgctttggcctgctgggggtaaatggggctggg
aagacctccacgtttcgcatgctgactggagacactgcgatcacctatggagaagcattt
ctcagtcatcacagtgtgctgacggagatggagcgggtccaccagctgatgggctactgc
ccccagtttgatgccatctgcgacctgctgactggcagggagcacctggagttctacgct
aggctccgaggggtgccagaggagtctgtggccaaggtggctcaatggggagtgaagaag
ctggggctgacccagtacgcagagcgagaggccggaggctacagtggaggcaacaaacgc
aaactctccactgctatctccctgatcggagctcctcctgttatattcctggatgagccc
accactggcatggaccccaaggccaagagattcctgtggaactgcatcctgagcgtcatc
aaggagggaagggccgttgttctcacctcccacagtatggaggaatgcgaagctctctgc
acacgaatggccatcatggtgaacggaaggttccagtgtctgggctccgttcagcacctt
aagaacaggttcggggacggctacacgatcgtcctgcgcctgttggggaccaagcctccc
gaggatccgtgcccggtggacacctacatcaagggctccttcccgggcatcgagctaaag
gagaggcaccagaacgtgctgcagtaccagctgccctcccactcctgctccttggcgcgg
gtcttcgatgtgctttccaacaaccatgaggagctgggcatcgccgactactcagtgtca
cagaccaccctggatcaggtgtttgtcaactttgccaaagagcagagcgatgacgacctg
ctgagggaagtgacagtcaacggtgggacaccagcacctcaacccagaagagcggcccag
cccacccaaccagggcagacagccaaaccagctcaaacaaccaagcctccccagtctgtc
aagtcctcagacggcagacccagagagaccaagccaaacggggtcacggacagtggcatg
gcgatgataagcaggccacaggagaggccccagtcgagcaggggagagagcaggagagag
ttgagtagtcggaggtcaagcaaagaatcgtccgccaacggatccaagggcacaagggag
acttcaggcaataaggatccgaccagtctgttcctagtgggtagcagcacacaagacagc
agtgtgtaa
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integrated database retrieval system
