Salvelinus namaycush (lake trout): 120054111
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Entry
120054111 CDS
T07522
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120054111 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120054111 (cnot1)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120054111 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120054111 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120054111
NCBI-ProteinID:
XP_038857427
UniProt:
A0A8U1ER23
LinkDB
All DBs
Position
Sna9:44349956..44368017
Genome browser
AA seq
2421 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGVNQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCAGSV
SQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMDPLT
AMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQ
LGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIGHFLQFPLTLQECVQYIEYGQQSRDPPVKMQGSITTPGSLA
LAQAQAQSQPPKAPQSGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTTNID
TLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVM
KRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLG
HWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQN
PWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQL
SAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPTPQF
SYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKIAM
TTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAAL
RAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEG
RRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQ
PMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSRDGI
AALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRCLIE
CRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSV
SHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGI
SQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLIT
RFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNT
VTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTL
TAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLA
PFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAF
PRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSEL
RSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGS
TPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEA
NTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQS
VAQCCMGQKQAQQVMEGTGAS
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgtttactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gcggaccttggcgttaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttctgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagtcttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctccgggcagtggcatttggagt
gatggaaaggacaaaagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagctcgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggcatggaggtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaagcactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccatcccaactctgccatcatcttgcac
tacgcgtggcacggacagggacagtccccctctatccgtcagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggagcccttcatccaggcatgtgtaacgttcctgaagaga
cgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaaagcgcccag
ctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgcagggagtgtg
tctcaagagctctctgagactatcttgaccatggttgccaactgtagcaacgtcatgaac
aaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagcaccagcagc
ctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggatcccctgaca
gccatgggttcgctgaacctgagcagctctgccacctctcacacacagagcatgcagggc
ttccctaccccgctgggctctgccttcagcaacccccagtccccagctaaggccttccct
ccactgtccaaccccaaccccagcacaccatttggggggattggaagcctctcttcacag
ctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatgccagcggtg
agcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccgaccaccttt
cagcagagtaagatgaaggcctctgacctatctcaggtgtggcccgaggctaaccagcac
tttagtaaggagattgacgatgaggctaacagttacttccagcgcatctacaatcacccc
ccacaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttcaaggactcc
accatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgtttgaggagtac
cgcttcttcccccagtaccctgacaaggagctgcacatcaccgcctgcctgttcgggggg
atcatcgagaagggtcttgtcacctacatggcccttgggctggccctcagatatgtcctt
gaagccttaaggaagccatttggatccaaaatgtattactttggaatcgctgctctagat
agattcaaaaataggctgaaggactatccccaatattgtcagcatttggcctcgatcggc
cactttctgcaattcccccttactttacaagagtgtgtgcagtatatcgagtatggccaa
cagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgggagcctggcg
ttggctcaagctcaggcccagtctcagcctcccaaagccccccagtctggacagcccagc
accctggtcaccacagctactgccaccaccactgtcgccaaaaccactaccatcacacga
cctacccctggcagcttcaagaaggatgtgccgccctccatcaacaccacaaacattgac
actctgctagtagcaacagaccaaaccgagaggattgtggaacccccagaaaatgttcaa
gagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacagaaggttgag
gagttaaaggaaactgtgaaagaggagtttatgccctgggtctcccagtatcttgtcatg
aagagggtcagcatcgagcccaacttccacagcctatactccaactttctagacactctg
aagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatcaaggttctc
cttacctctgataaggcagctgcaaacttctctgatcgatccctactgaagaatttgggc
cactggcttggcatgatcactctggcaaaaaacaagcccatcctgtacacggatttggag
gtaaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactgtatgtggtc
ccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttccgacctcagaat
ccctggaccatggccatcatgaatgttctggcagagttgcatacggaacatgatctgaag
ctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggacatcaatgac
ctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctggaggagcagctc
tctgcaccaaagaaagaggccaagccccctgaagaaatgattcctattgttagcacaggt
atccagcactttcaaactgggatgccccttgtcggagactttcttccatttgcagctgca
ccatccactcccgccccaaccaccacttgctcagctactgggccccctaccccgcagttt
agctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatcaatatcaac
atcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgagacagtccatt
gagcgggccgtgcaagagctcgtccaccccgtagtggaccgctccatcaagatcgccatg
acaacttgcgagcagatcgtcaggaaggactttgctctggactcggaggagtcgcgcatg
cgtgtggcagctcatcatatgatgcgcaacctgactgccggcatggccatgatcacctgc
cgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgccgctgccctc
agggcccccaccccccagcagagagagatgatggaggaggctgctgccagggtcgcccag
gacaactgtgagctggcctgctgcttcatccagaagactgcagtggagaaggctggccca
gagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgtcaggagggc
cgtcgctactgtgaccccgttgtgctgacctaccaggccgagcgcatgccagagcagatc
agactcaaggttggaggcgtagaccccaaacagctggcagtgtatgaggagtttgcccgg
aacgttccaggcttcctacccagcaacgacctgtctcagcccacaggattccttgcccaa
cccatgaagcaacaggcatgggccacggatgacgtggctcagatctatgacaagtgcatg
gcagacctggagcagcacctccacgccatccctcccgcgctggccatgaaccctcagacc
caggctttgcgcagcctgctggaggccgtggccctagccaggaactcccgggacggcatc
gccgctctgggcctgctgcagaaggctgtggagggtctgctggatgctaccagtggtgcc
gatgctgacttgcttctgcggtatagagagtgccacctgctggtgctcaaagccctccag
gacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgcctgattgag
tgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatcagaaaccacctg
gtcaacatgcagcagtatgacctgcacctggcacagtctatggagaatgggctgcactac
atggcggtggcgtttgccatgcagctggtgaagctgctgttggtggatgagcgcagtgtg
agccacattaccgaggcagacttgttccacactatcgagactctgatgcgaaccagcgcc
cactccagggccaacgcacctgaggggcttcctcagctgatggacgtggtccgttccaac
tacgaggccatgattgaccgggcccacggaggacccaactttatgatgcactctggcatc
tcccaggcatccgagtacgacgatccgccgggcctgagggagaaggctgagtacctgctg
agggaatgggtcaacctgtaccattctgcagccgccggccgggacagcaccaaggccttc
tctgcctttgtgggacagatgcaccagcagggcattctgaagaccgatgacctgatcact
cgtttcttccggctgtgcacggagatgtgtgtggagatcagctaccgtgcgcaggccgag
cagcagcacaaccccgcggccagcgccgccatcatcagggccaagtgttaccacaacctg
gacgcctttgtgcgcctcattgccctgctggtcaagcactccggagaggccaccaacact
gtcaccaagatcaacctgctcaacaaggttctaggtattgtggttggagtgttgatccag
gaccatgatgtgagacagactgagttccagcagttgccttaccaccgcatcttcatcatg
ctgttgctcgagctcaatgcccccgagcacgtgctcgagaccatcaacttccagaccctc
accgccttctgcaacactttccacatcctgaggcctaccaaagcccctggctttgtttac
gcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggcgcacacccca
cagcagaagggttggcccatgtatgcgcaacttctcattgatctgttcaagtacctggcg
cccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaagggtaccctg
cgcgtccttctggtcctactgcatgacttcccagagttcctgtgcgactaccactacggc
ttctgcgacgtcatcccgcccaactgcatccagctccgcaacctgattctgagtgccttc
ccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgacatgctcagc
gagatcaacatcgctccgcgcatcctcacaaacttcaccggagtgatgccctctcagttc
aagaaggatctggactcgtacctgaagacacgctcccccgtcaccttcctctctgagctc
cgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttgcagcacaac
gacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatccagctgatc
aacgctctggtgctgtatgtgggaacccaggccattgcacacatccacaacaagggcagc
accccctccatgagcaccatcactcactcagcccacatggacatcttccagaacctggct
gtggacctggacactgaggggcgttatctcttcctgaatgccattgccaatcagctgcgc
tacccaaacagccacacccattacttcagctgcaccatgctgtacctgtttgctgaggcc
aacactgaggcaatccaggagcagattaccagggttcttctggagaggctgattgtgaac
aggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaatcccgccttc
aagttctggagccacgactttgtacactgtgccccggagatcgagaagttgttccagtca
gtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggcactggtgcc
agttag
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integrated database retrieval system
