Salvelinus namaycush (lake trout): 120054147
Help
Entry
120054147 CDS
T07522
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120054147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120054147
03036 Chromosome and associated proteins [BR:
snh03036
]
120054147
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120054147
Coactivators
SAGA/TFTC/STAGA complex
120054147
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120054147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
120054147
NCBI-ProteinID:
XP_038857497
UniProt:
A0A8U1BQJ1
LinkDB
All DBs
Position
Sna9:47637941..47672021
Genome browser
AA seq
1001 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSDIKREGSTGAVSQFSGK
VRDQVGSLEPPQQGHPKAVLNAEPCANLAISNKSITASTSSITTGGIINAGTNLQTHGAA
SRIISPAPPGSVTLPAQTTSFNRGTVLGPAEISVVTAPNSNPTTTTAISTPSPGLQSFNG
SPGAVKLVNSPAAAPQIGSGGNTVISTASAGNSNIIVSMASQPPSLPNYPVSQSAVAFVT
PTVTLQRHPSPMASASQNGVIDPKVSAVVTQGAGSPGATTSQVMNRNNTLINTTMVAPNQ
PVSAGQSIILGGSPSPVVVNSPISQAQSVASPTLTAGVKPTVNGVGQPTVTIVRPPGAPV
MTTSVQQQRPGLVASPTRTVAPQMVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVP
QQVLAQAQAKTQQGQAAVSNISPRPATPTAGATIRVGTPSQAPCTTQAVRLASPVQARML
QSPSPTSSAIQKAITVAPAGASVSVKMTTPQKAQTVITGGQALVKPGAVRPFNTAAAASA
STTPTMVTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKALVQDLLDAKIEP
EEFTTRLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTNAAALAAASNTTTST
IRARLPTTVGPATGMVRTPTTALGVRRPGVQGVQTRMPMVIPQTIRPQGTVARGLTIIAG
RSPVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTK
IRSCKDEAFLPPGLLHRRIMETAKRFGVTEVPAEAVNYISHATQARLRSMLEKVSTIAQH
RTDGGKDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLLKAAKSRARQEDPEQAR
LKAKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGSSTSGTEVALGSGAGSTTA
ASSRQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattccgatatcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
gtgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaaccctgcgcgaatctggcgatttcgaataagagtatcaccgcttctacctct
tccatcactactgggggcattataaacgctggtaccaatttacaaacacatggagccgca
tctcgcatcatttcccccgcaccaccaggatcggtaactttgcctgctcagacgactagc
ttcaacagagggactgttttgggtccagctgaaatatcggtggtgactgctccgaactca
aaccccacaacaacaacagctatcagtactccttcacctggattacagagttttaacggt
agccctggagctgtgaagttggtcaactcgccagctgctgctccccaaatcgggtcaggc
ggcaacactgttataagtactgccagtgcgggcaactcaaatatcattgtgtctatggct
tcacagcctccttctctaccaaactatcctgtatctcaatctgctgtggcatttgttact
cccactgttacattgcaaaggcatcccagccccatggccagtgcctcacagaatggagta
atagaccctaaggtttctgcagtggtcacacagggtgcaggttctccgggggccaccacc
tctcaggtcatgaaccgcaataacactctcattaacactacaatggtggcacccaaccag
ccagtctctgctggccaatcaataattcttggagggtctccctctcctgttgttgtgaac
tcacccataagccaggcacagagtgtggcgagtcccactctcacagccggggtgaaacca
acggttaacggagttggtcagcccacggtgaccatcgtgaggccccccggtgctcctgtg
atgaccacctccgtgcagcagcagagacctgggctggtagcgagtcccacgaggactgtg
gcaccacagatggtcgtcagaccaccacagcagaccaccattcagttaccccctggattt
accataccacccggtatggtgctggtgcgtacagacacaggccagctggtaatggttcct
cagcaggttctagcccaggctcaggctaagacccaacaaggccaggcagctgtctctaac
atctccccccggcctgctacacctaccgctggggccaccatcagagtcggtactcccagc
caggccccttgtacaacccaggctgttcgtctggcctcccctgtccaggccagaatgttg
cagtccccctctcccaccagctctgctatacagaaggcgataaccgtggctcctgcaggt
gcgtctgtgtcggtgaaaatgaccacccctcagaaggcccagacagtgatcacggggggt
caagccctggtcaagcctggtgctgtacggccctttaacactgcagcagcagccagtgcc
tccacaacccctacaatggtaactgcaccagtctcccaggaaatgcaagaaaatgtgaag
aagtgtaagaacttcctttccaccctgatcaagctggcgtcccacaactccccatctcca
gacacatccaagaacgtcaaggccctggtgcaggatcttctggatgctaaaattgagcct
gaggagttcaccacacgtctgcaggctgagctgaagtcctctccgcagccgtacctcatc
cccttcctcaagaaaagccttcctgccctgcggctgtccctgctcaacaaccagcagtct
ctgctggcctccaccaacgctgcggccctggccgctgcctccaatactaccaccagcact
atcagggcccggctccccaccaccgtcggccccgccacaggcatggtcaggacacccacc
actgctctgggtgtgagaagaccaggggttcagggggtccagactcgcatgccgatggtc
atccctcagaccatccggccacaaggcacagttgcaagaggactcactattattgcaggc
agatctcctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcct
ggaggcgggacgttcagagatgatgatgacatcaacgacgtggcgtccatggcgggggtg
aacctgaacgaggagaacgcccgcatcatggccaccaactctgagctggtgggcaccaag
atccgctcctgtaaggacgaggccttcctcccaccaggcctgctgcacagacgcatcatg
gagaccgccaagaggtttggggtgacagaggtcccagctgaggcagtgaactacatctcc
catgctacccaggccaggctgagatccatgctagagaaagtgtcaactatcgcccagcac
cgcactgacgggggcaaggatgaggagtggtatgagccgtcgacagacgtcagggcccag
ctccgcttctttgagcagctggacaggatggagaaacaaaggaaggacgagcaggagagg
gaggtcctactcaaggctgccaagagtcgcgccaggcaggaggacccggagcaagctcgg
ttgaaggcgaaagctaaagagatgcagcaggcggagcaggcccagatccggcagcgtgaa
gccaacctcactgccctggcggccattggtccccgcaagaaacgcaagatggactcgcca
gggagctccacatcgggcacagaggttgctttgggttcaggggccggctctaccacagcc
gcctcctcccgccaacagctccgtcagcggatcacgcgagtcaatctcagggactttatc
ttctgcctggagcaggagagggccacatcccggtccttactgctctataaggctctcctg
aagtag
DBGET
integrated database retrieval system
