Salvelinus namaycush (lake trout): 120054151
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Entry
120054151 CDS
T07522
Name
(RefSeq) nuclear pore complex protein Nup160-like isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120054151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120054151
03036 Chromosome and associated proteins [BR:
snh03036
]
120054151
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120054151
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120054151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NUP160_120_M
Beta-prop_Nup120_160
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
TPR_1
TPR_2
TPR_12
Motif
Other DBs
NCBI-GeneID:
120054151
NCBI-ProteinID:
XP_038857508
UniProt:
A0A8U1BLR1
LinkDB
All DBs
Position
Sna9:complement(47948585..47976303)
Genome browser
AA seq
1390 aa
AA seq
DB search
MAVALERSFIEICGFERETLPRFREITVNLGLNALPGGVKYPDSAGGFHYEESGKLLSIT
SNRCIHWSTSGDTVQLVEQSLDTNLLNNAVKLKITHCPLLPGGVHIQETLNNVIILIVTN
QTVHRLVLPHPTRMYRSELVTELQMQSIFTDVGKLSLQDPAHSAAIPSPVGQTAGSTAST
AWLSHQGEAHYALASPAGGILVITLPPHDTQGSVTILELKRSSVMQRLAGWMPTAIRGEQ
SPGDLALSLAVRELEDDTFIFALCQDHKLRMWSYRDQVCLMETDMLEYMPACRGVKGSPG
QGHRLRLAFSPSTGLCLAVYLAVPSRGQFTVLQLVATDNNRYSLDHISSLFATQETLVDF
ALTSTDIWGLWLDDTNQTVVKYINFEHSTAGQWNQVFVQPAPEEEVHIGADQDPRETYLD
MLFSPLRFTASAIVKALQIYRRGTERIADLPWETLKKEVTVAVENELQSSVTEFEFSQEE
YRQLQVEFWSKFYACCLQYQEALATPLGLLLNPHTHMVCLLKKGFVSFLLPCFAVDHLYL
SFDEYLFSEDTPVSEDPEVGRDVMQLVQCLRLVSDAVPGDMAYEMEKALEHLQSPERAAE
MVLENLLANDNENVIEDIQNKLQDIRNPVSAMAALIREMDLETDSEPGGEGPLTTAGLSV
RISLSQLYGSSVAVAVICQAVCQMAMTRVLFCRDLLILQQLYLRLGDNVFLAGGDQLLQL
QQDLIPRSSHLLSSYYLLKHISQSLATAVPLDIIDANLQHLSVLELSDSPALASNRSVLS
PQTVVELFYQSVARKAIITQIYSQQQSTALLHWPQMVSSVVTLLAQQLWPNNPGFQFPEC
LMGNCQYTQLQEYVRLIGPWCQVNVGSCRFMLGQCYLANGEGQKALQCFQEAATEVEKEE
FLLRLTGAEEEEVTGASRLQYYNKVLRLLEDVGLPELVIHLSTLAITEAVNDPRSQAALW
TRIFKHHLDLGHNSQAYEALTQNPDSSRQLDCLRQLVVVLCERSQLQDLVQFSYVNLHDE
VVSIIESRARAVDLMSHNYYELLYAFHINRHNYRKAGTVMFEYGMRLGREVRTQLGLQKQ
VNCYLASLNCLRLIRPDYAWIVQPSSGAVYERPGASPKRNYDGEFATGPVSGQIDILELK
DLQKEYTLARSRLNLAQHHPPSAAIAGSASAVEMVSLLVQTGLFDCALSLCQTFKLSLTP
IFEGLAFKCIKLQYGGEESQNEAWNWLAANQLSTIVTTKESSATDEAWRLLASYLEKHPT
QNAQHHRCVINKLLSHGVPLPDWMVNTYKGVDAAALLRLYLNFDLLEAAAELVLEYVDAL
LGKGHQYFGIERPLSATASLVWLPYTSIDQLLQALNETQTNASIYNKLQDKLNDYHKLVD
QTTRRRLQAQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccttggaaaggagttttatagagatatgtggatttgagagggaaacccta
ccaagattccgggagataactgtaaacctcggtctgaatgctcttcctggcggtgtaaaa
tacccagacagcgcaggaggctttcattatgaggagagtggaaaactcctgtccatcact
agcaacagatgcatacactggtccacctctggggacacagttcaactggtggagcagtct
ctggacaccaacctactgaacaatgctgttaaactcaagatcacacactgccccctgctg
cctggaggtgtacacatccaagagaccctcaacaatgtcatcatcctcattgtcaccaat
cagaccgtgcaccggctggtgctgccacaccccacacgcatgtaccgcagcgagctggtg
acagagctccagatgcagtctatcttcacagacgtggggaagctgagtcttcaggaccca
gcccacagcgcggcgatccccagccccgtaggccagacagcaggctccaccgcctcaaca
gcctggctcagccaccagggagaggcccactatgccctggcatcacctgctgggggcatc
ctggtcatcacactgcccccacatgacacacagggtagcgtgaccattctggagctgaag
aggagctctgtaatgcagagactcgctggctggatgccaactgcaatcagaggtgaacag
agtcctggggacttggccctgagtctggcagtaagggaactggaggacgacaccttcatc
ttcgctctgtgtcaggaccataaactacgcatgtggtcctatagggaccaggtgtgtctg
atggagactgacatgttggagtacatgccagcgtgccgtggcgtgaagggttccccaggg
cagggccatcggctgcggctagccttctccccctctacggggctgtgtctggccgtatac
ctggccgtaccttccaggggacagttcactgttctgcagctggtggcaacggacaacaac
cgctacagcctggaccacatctcctcgcttttcgccacacaggagacactggtcgacttt
gctctgacctccacggacatctggggcctgtggctggacgataccaaccagaccgtggtg
aaatacatcaactttgaacattccacggcaggtcagtggaaccaggtttttgtgcagcct
gcccccgaggaggaggtccacatcggagcagaccaggaccccagggagacctacctggac
atgctattctcccccctgagattcactgcctctgctatagtcaaagccttacagatttac
aggagaggcacagagcgaatcgctgacctcccctgggagaccctcaagaaagaagtcaca
gtggctgtggagaacgagctgcagagcagtgtgacagagtttgagtttagccaggaggag
tacaggcagctgcaagtggagttctggtctaaattctacgcctgctgtctgcagtatcag
gaggctctggccactccgctcggcctactgctcaacccacacacacacatggtctgtttg
ctcaagaagggctttgtgtcattcctgctgccctgctttgctgtggaccacctgtacctg
tcctttgacgagtacctgttctcagaggatacgcccgtcagtgaagacccagaagttggt
cgtgacgtgatgcagctggtgcagtgtctgaggctggtgagtgacgcagtgccgggggac
atggcctatgagatggagaaggccctggaacatttacagtcacctgagagggctgcggag
atggtgctggagaacctactggccaatgacaatgagaatgtgatagaggacattcagaac
aagctgcaggacatccgtaacccggtgtcggccatggctgcactgatcagagagatggac
ctggagacggactccgagccaggaggagagggacctctcaccacagcaggcctgtcggtg
cgtatcagtctgtcccaactgtatggcagcagtgtggcggtggctgttatctgtcaggct
gtctgccagatggccatgaccagagtcctgttctgtagggacctactcatactgcagcag
ctctacctacgcctcggagacaatgtgttcctggctggaggggatcagctgctccagcta
caacaggacctgatcccccgctcctctcacctgctctcctcctactatctcctcaaacac
atcagccagagcctggccactgccgtgcccctcgacatcatagatgccaacctgcagcac
ctgtcagtcttagagctgtctgattctccagccctggccagcaacagatcagtgttgagc
cctcagacggtggtggagctgttctaccagagcgtagcgcggaaggccatcatcacccag
atctactcccagcagcagagcacagccctactccactggccccaaatggtctccagcgtg
gtcaccctgctggctcagcaactttggcctaacaatccaggcttccagttccctgaatgt
ctgatgggcaactgccagtacacacaactgcaggagtatgtgcgtctcattgggccctgg
tgtcaggtgaacgtgggctcctgccgcttcatgctgggccagtgttacctggccaatgga
gagggacagaaggcactgcagtgttttcaggaggcagcgacagaggtggagaaggaggag
tttctgctgagattgacaggagctgaggaggaggaggtcacaggcgcctcaagactacag
tactacaacaaggtgttgcggttactggaggatgttggtctaccagagctggtcattcat
ctatccactctggccataacggaggccgtcaacgaccccaggagtcaggctgccctgtgg
acccgcatcttcaagcaccacctggacctgggacacaacagccaagcctacgaagccctc
acacagaaccctgactcaagcaggcagttggactgtctgcgtcagctggtggtggttctt
tgtgaacgctctcaacttcaggacctggtccagttctcctacgtcaacctgcacgacgag
gtggtcagcatcattgagtccagagccagagcagtggacctgatgtctcacaactactac
gagctgctctacgccttccacatcaacagacataactacaggaaagcgggtacagtgatg
tttgagtacggcatgcgtctgggcagggaggtgaggacccagctaggtctccagaaacag
gttaactgttacctggcctccctcaactgtctacgactcatcagacctgactacgcctgg
atcgtacagccgtcctctggcgcggtgtatgagaggcctggcgcgtcaccgaagaggaac
tacgacggagagtttgctactggtccagtgagtggtcagatagacatcctggagctgaag
gaccttcagaaggagtacaccctggcccgtagccgcctcaacttggctcagcaccacccg
ccgtccgctgccatcgcaggcagtgcctctgcagtagagatggtgtccctgctggttcaa
acaggactgtttgactgtgccctctcactatgccagaccttcaaactgtccctcacgccc
atcttcgaggggctcgccttcaagtgtataaagttacagtacggtggagaggagagtcag
aatgaagcctggaattggctggctgccaatcagttgtctaccatcgtcacaaccaaagag
tcaagtgcgacagatgaggcgtggcgcctgctggcctcctacctggagaagcaccctaca
cagaatgctcagcaccatcgctgtgtcatcaacaagctgctgtcacacggcgtaccgctg
cccgactggatggtcaatacctacaagggcgtggacgctgcagcgttgttacggctctac
ctgaactttgacctgctggaggcagcagctgagctggtgttggagtacgtagacgctctc
ctggggaagggacaccagtacttcggcattgagaggcccctctctgctacagcatcattg
gtgtggctcccatacacttccatcgaccagctccttcaggcgctcaacgagacccagact
aacgcaagtatatacaacaaactgcaggacaagctgaatgactaccacaaactggtggac
cagacgacaaggcgaaggctccaggcccagtag
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integrated database retrieval system
