Salvelinus namaycush (lake trout): 120054173
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Entry
120054173 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120054173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120054173
03019 Messenger RNA biogenesis [BR:
snh03019
]
120054173
04121 Ubiquitin system [BR:
snh04121
]
120054173
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120054173
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120054173
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120054173
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120054173
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120054173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-UDP
RDD1
zf-CCCH_2
DZR_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
120054173
NCBI-ProteinID:
XP_038857542
UniProt:
A0A8U1BQL5
LinkDB
All DBs
Position
Sna9:52390837..52407174
Genome browser
AA seq
848 aa
AA seq
DB search
MSHSPEIKDDSMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQKIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPSFLQTPTCSGEKSKSKSSNSTQRPSNGKDGWPTLSGYGGKLANGLSEDRKS
PPLLDCCLDPEVMTSDGLGLGLGLDTGMGSGQGAALSPFSSNCDSNGPSDKPPESIGMVN
GETLQQMPNRESPSPPPGLTKPTSSLVVPITVADLTARSPFEGAAAESQSLFSDNSNFRH
PNPIPSGLPPFASSPRGGSDWPMTPEPQSLFASDTIPVSSSTDWQAAFGFGSSTKQQQDD
DLGFDPFDVTRKALADLIEKELSVQDQHSPLGSPSPFGLHHPGSHHGLHMPLSNPNHFPS
SIGPPPRLSQLHHRHISSSFSFPGSQSQSSHHGESQAAQAAAARHTWMGMPPSTRSNNHL
LSHLNHSANAGGGHSNFLDLSMPPQHHSHNTGLGGIPMSENSSSIDGLNVKEWQDGLRAL
LPNININFGGLPNSSSSSSSSSSSSMNHMGGPGGLNRPGGLSHSLSWDGTASWMDPAIIT
GSIPASAGSSLDCLQEDQNPPHWLKSLQALTEMDGPTLPSLPQQPQNQQHQSLHHSHHHG
LLDQASSHPHLHHRAGSGWAPYLPGLTQPTHTNPSQFHSPPPGFQTAFRPPGQSATELLQ
SAAAGDRH
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccccgagataaaggacgactccatggagtgccctctgtgcatggagccg
ctggagattgacgacgtgaacttctttccctgcacctgcggctaccagatctgccgcttc
tgttggcaccgcatccgcacagatgagaacggcctctgccctgcctgcagaaagccgtac
ccggaggaccctgcggtgtacaagcctctgtcacaggaggagattcagaagataaagaac
gagaagaagcagaagcagaacgagaagaaacagaaggtgacagagaatcggaaacacctg
gccagcgtcagggtggtgcagagaaacctggtgtttgttgtcgggctctctcaaaggctc
gcagacccagaggttctaaagaggccagagtattttgggaagtttgggaaaatacacaag
gtggtcatcaacaacagcacatcatatgcaggttcacagggtcccagtgccagtgcctac
gtcacttacatccgctctgaagacgccctcagagcaatacaatgtgtgaacaatgtggtg
gtggacggtagaacactcaaggcttctttaggcacaacaaaatactgcagttacttcctg
aaaagcatgcagtgtcccaaaccagactgtatgtatctacatgagctgggggacgaggcg
gctagctttacgaaagaggagatgcaggctgggaaacaccaagaatacgagcagaaacta
ctccaggacctctacaaaatgaaccccagctttctacaaacaccaacgtgttcaggggaa
aagtccaaaagcaaatcttcaaattctacacaaagacccagcaacggcaaggacgggtgg
ccaacactatcagggtatggtggcaaactggccaatgggctgtcagaggacaggaaatct
cctccgttgctagactgctgtctggacccagaggttatgacctcagacgggttaggactt
ggcctggggctggacacagggatggggtctggccagggggctgccctgtcccccttctct
tctaattgtgacagcaacggtcccagcgacaaacctccggaatcaataggtatggtgaat
ggagagactttacaacagatgcctaaccgcgagtccccttcccctcccccggggctgact
aagcccaccagcagtttggtggttcccatcactgtagcagacctcaccgcccgctcgccc
ttcgagggggctgctgcagagtcccagtccctgttctcagacaacagtaacttcagacac
cccaaccccatcccgtccggcctgccccccttcgccagctcacctagagggggatccgac
tggcccatgacccccgaaccacagagcctcttcgcatcagacacaataccggtctcctcc
tccacagactggcaggcagctttcggcttcggctcctctactaaacagcagcaggacgac
gacctgggcttcgacccctttgacgtgacacggaaggccctggctgacctcattgagaag
gagctgtcagtccaggaccagcacagtcccctggggtcccccagccccttcggcctccac
caccccgggtcccaccacggcctccacatgcccctctccaaccccaaccatttccccagc
agcattggacctccaccccgcctctctcagcttcaccacaggcacatttctagctccttt
agtttccctggttcccagagtcagagcagtcatcatggtgaaagtcaggctgcccaggcc
gctgcagctcggcatacctggatgggcatgcctccctcgacacgcagcaataaccacctc
ctctcacacttgaaccactcggccaatgctggaggaggacatagcaacttcctggacttg
agcatgcctcctcagcaccacagtcacaatacagggctgggagggatccccatgtcagaa
aacagcagttctatagacggcctcaatgtgaaagaatggcaggacggtttgagagctctc
ctccccaacatcaacatcaacttcgggggtctccccaactcctcctcctcttcctcttcc
tcctcttcctccagtatgaaccacatggggggtcctggggggctaaacaggccaggggga
ctctcacacagtctcagctgggacggtacggccagctggatggacccagctatcatcaca
ggtagcatcccagcctcagcaggcagcagtttagactgtctccaggaggaccagaaccct
ccccactggctcaaatccctccaggccctgaccgagatggacggccctacactgccatca
ctcccccagcagccccagaaccagcagcaccagtccctccaccacagccaccaccatggc
ctcctagaccaggcctcctcacacccacacctccaccacagagcaggctctggttgggcc
ccctacctgcccggcctgacccagcccacacacaccaaccccagccaattccacagccct
cccccaggcttccagacagccttcagacccccaggccaaagcgccacagagttgctacag
agcgccgccgccggggaccgccactaa
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