Salvelinus namaycush (lake trout): 120054283
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Entry
120054283 CDS
T07522
Name
(RefSeq) platelet-derived growth factor receptor alpha-like
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04144
Endocytosis
snh04510
Focal adhesion
snh04540
Gap junction
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120054283
04020 Calcium signaling pathway
120054283
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120054283
09144 Cellular community - eukaryotes
04510 Focal adhesion
120054283
04540 Gap junction
120054283
09142 Cell motility
04810 Regulation of actin cytoskeleton
120054283
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
snh01001
]
120054283
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
snh04090
]
120054283
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
120054283
Protein kinases [BR:
snh01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
120054283
CD molecules [BR:
snh04090
]
Proteins
120054283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Ig_3
Pkinase
I-set
ig
Ig_2
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
V-set
Receptor_2B4
Kinase-like
Motif
Other DBs
NCBI-GeneID:
120054283
NCBI-ProteinID:
XP_038857631
UniProt:
A0A8U1BI98
LinkDB
All DBs
Position
Sna10:28102509..28126014
Genome browser
AA seq
1462 aa
AA seq
DB search
MAPVDLLSRGQSQVTVTRGLATPTIVSTEDEFVLEPLSVFNISCTGKRNVAWVEPLPDDT
FVLPGYYTSTLFIYNASVTHTGYYSCKYQYKEGDEEVDGVANDAFIYVFVPDPEIPFVPE
EPDRMLVPIYPNRTIIPCRVSDPQSQVVLKSAPSGVEVDAVYKNKIGFIGNLDAGLYICE
TTVNGMTMTSDTYTVEANKQMENVHVEVKASEEAVRLGEPFNITCVAPPGLPYQQQWLHP
RKQAADAVQMKQTLPDRVVYTLSIPAATSQDSGVYECSITNNVSGEIRANRVAVTVFENT
FVMLGHSGIGVVEFVSMMEETEFTISIEAFPAPKVTWLKDGIAITENSYFLTKTSHLEGN
QHQSTLTLRQPLEEDSGNYTIMVLSIPHTAQFSFTLKVKASASVLFQPASAPVLIPQREE
MVVPLHTPFTLTCRGEAELAWETPVYLSEQTEEDNSGLFVTTITVENATAANTGFYTCFY
NGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPFGNHVLNGHDEMEIQCRVSDPSANVTLVN
TDTQQAVPMTVYDSKRGAVGFFSAGTYVCKALINGEEHLSEEYIVHGWAGGLELRVELKA
QKTALLVGDTITVTCVARGSEILEDHWKYPGKLVNRGLKSVRENKRDQEIQYIMTVPQAS
AKDSGIYACSITDIISNESQTKELVITVYESPFVSLRPVFSSQESADLDESREFRADIDS
FPSAQVTWLKDGLPLNYVAAEITTSLQQLSETRYQSVLTLIRAKEEDSGNYTIRVQNGNQ
THSHSFSLQVKVPAVIVGLMDLHHGSASGQSVVCIAGGMPTPEVEWFICKNIKHCANDSS
QWVPLPTNDTDIAVEAHFNQDNQLESQVIFVRLENTLAVRCLARNEMAVVSREVKLVSQG
PHSELPVTAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQL
PYDSRWEFSHDGLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQA
LMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFLSLHSEK
TKKDLDIFGINPADESSRSYVILSFESGKGDYMEMKQADTMQYVPMLEMSDASKYSDIQR
SEYDHPPSQKGDNEMDSLLSEDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDLAARN
VLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVWSYGI
LLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPADVYEMMIKCWNSEPEKRPSF
LSLSESVASLLPSGYKRCFERASHEFLKSDHPAVTRVQVESEDTYIGITYKSQDKLKDRE
SGFDEQRLSSDSGYIIPLPDLDPLSDDEYIKRIRHSSQTSEESAIETGSSFTLAKREGET
LEDISLLDEMCLDSELVEDSFL
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtggatctgctctcacggggccaaagccaggtcactgttacccgcgggctg
gccacaccgaccattgtatcaactgaagatgagtttgttctcgagccgctctccgtgttc
aacatcagctgcaccggtaaaaggaacgttgcttgggtcgagcccctaccggacgacaca
ttcgttttgcctggatattacacctccacgctcttcatctacaacgcttctgtgacacac
accggatattactcctgcaaataccaatacaaagagggcgatgaagaggtggatggcgta
gccaatgatgcgttcatatacgttttcgtcccagatcctgagattccatttgtgcctgag
gagccagatcgcatgctagtcccaatctatcccaatagaaccatcatcccatgcagggtg
tcagaccctcaatcccaggtggtcctaaagagcgctcccagtggagtagaggtggacgca
gtttataagaacaagatcggcttcattggcaacctggacgctggcttgtacatctgtgag
accaccgtgaacggcatgacaatgacgagtgacacttacaccgtggaggccaacaaacag
atggagaacgtccatgtggaggtgaaggccagcgaagaggcagtgagactgggggaaccc
ttcaacatcacctgtgtggcacctccaggactgccctaccagcagcagtggctccacccc
aggaaacaggctgcggatgcagtccagatgaaacagactctgcctgatagagtggtctac
accctcagtatcccagcagccacctctcaggacagtggggtgtatgagtgctccatcacc
aacaacgtcagtggagagatcagagccaacagggtggctgtcactgtctttgagaacacc
tttgtgatgttgggccacagtgggattggagtggtggagtttgtcagtatgatggaggag
acagagttcaccatcagtattgaagccttccctgctcctaaagtcacctggctgaaagac
ggtatcgctatcactgagaacagctacttcctcaccaagaccagccatctggaggggaac
cagcatcagagcactctgactcttcggcagccactagaggaggacagtggtaactacacc
atcatggtcctcagtatccctcacactgcccagttctccttcaccctcaaagtgaaagcc
tcagcctcagtgctgttccagccagcctcagctccggtgctgatcccccagagagaggag
atggttgttcccctccacacccccttcactctgacttgcaggggcgaggccgagctggcc
tgggaaacgcctgtctacctatcagagcagacagaggaggacaacagcggcctgttcgtc
accacgattaccgtagagaacgccactgcggcaaacactggtttctacacctgcttctac
aacggagggaactccactgaggagggagaggacagcagcatctacatatatgtgccagat
ccagaggtgccctttgtcccctctctggtgccctttggcaaccacgtcctgaatggtcac
gatgagatggaaatccagtgtcgcgtgtcggaccccagtgccaatgtgaccctggtcaac
actgatacccagcaggccgtgcccatgactgtctacgacagcaagaggggcgccgtgggc
ttcttcagtgcaggaacctatgtctgcaaggccctcatcaatggagaggagcacctcagt
gaggagtacatcgtccatggctgggcaggggggttagagctgcgtgtggagctgaaggcc
cagaagactgctctcttggtgggagacaccatcactgtcacctgtgtggcccgggggtct
gagatactggaagaccactggaagtaccctggaaaactggtgaaccgtggcttgaagtcg
gtgcgtgagaataagagggaccaggagatccagtacatcatgactgtcccccaggcctca
gccaaagacagcggcatctacgcctgctccattactgacatcatcagcaatgagagccag
accaaggagctggtcatcactgtctatgagagcccatttgtgtcgctgcgccctgtgttc
agttctcaggagtcagcagacctggatgagagcagagagttccgggccgacatcgactcc
ttccccagcgcccaggtcacatggctcaaagatggcctccccctcaactatgtggcggct
gagataaccaccagcctccagcagctcagcgagaccaggtaccagagtgttctgaccctg
atccgggccaaggaggaggacagtgggaactacaccatcagagtgcagaacgggaaccag
acccacagccacagcttcagcctgcaggtcaaagtacctgcagtcattgtgggcctgatg
gacctccaccatggctcagcctcaggccagtctgtagtgtgtatcgctggaggcatgccc
actcctgaagtggagtggttcatctgcaagaacataaaacactgtgccaacgactcgtct
cagtgggtgcccctgccaaccaacgacacagatatcgctgtggaagcgcattttaatcag
gacaaccagctggagagccaggtgatcttcgtgcgtcttgagaacactctggccgtccgc
tgcctggccaggaacgagatggccgtcgtcagcagggaggtgaagctggtgtcacaaggc
ccccactctgagctgcctgtaactgctgctgttttggtgctgctggtcattgtcatcatc
tcactcattgtcctggtcattatctggaaacagaagcctcgctatgagatccgctggagg
gtgatagagtcagtgagccctgatggccatgagtacatctacgttgaccccatgcaactg
ccctatgactccagatgggagttttctcacgatgggctcgtactgggtcgtgtcctgggc
tctggggcgtttgggaaggtggtggagggaactgcatatggactcagccgctcccagcct
gtcatgaaggtggctgtgaagatgctgaaacccacagcccgctccagtgagaaacaggcc
ctgatgtcagagctgaagatcatgactcacctgggccctcacctcaacatcgtcaacctg
ctgggggcctgcaccaagtcaggccccacctacatcatcactgagtactgcttctatgga
gacctggtcaactacctgcacaagaacagagagaacttcctcagcttgcactcagagaag
accaagaaagacctggacatctttggcataaaccctgcagacgagagcagcaggagctat
gtgatcctgtcctttgaaagtggtaaaggggactacatggagatgaagcaggcagacacc
atgcagtacgtgcccatgctggagatgagtgatgcctccaagtactccgacatccagagg
tctgaatatgaccacccaccatcacagaagggtgataatgagatggacagcctgctgtca
gaagacggcaacgagggcctcagcaccacagacctgctcagctttacctaccaggtggcc
agaggcatggagttcctgtcctctaagaactgtgtgcatcgggacctggctgctaggaac
gtcctgctctctcaggggaagatagtgaagatctgtgactttggcctagccagagacatc
atgcatgacaacaactatgtctccaaaggcagtaccttcctgccagtgaagtggatggct
cctgagagtatctttgacaacatgtacaccaccctcagtgatgtctggtcctacggcatc
ctcctctgggagattttctctctaggtggcaccccatacccagggatggtagtggactcc
agcttctacaacaagatcaagagtggctacaggatggccaaacctgagcacgcccccgct
gatgtgtatgagatgatgataaagtgttggaacagtgagcctgagaagaggccatccttc
ctcagcctgagtgagagtgtggcttcactgctgccttccggctacaagaggtgcttcgag
agggcaagccatgagtttctgaagagcgaccatccagcagtgaccagggtccaggtggag
agtgaagacacctacattgggatcacctataagagtcaggacaagttgaaggacagggag
agtggcttcgacgagcagcgcctcagctctgacagcggttacattatccccctccctgac
ctggaccctctgtctgatgatgagtacatcaagaggatccgccacagctctcagacatct
gaagagagtgccatagagacaggctccagtttcacgctggccaagagggaaggagagacc
ctggaggacatcagcctgttggatgagatgtgtctggactcagagctggtggaagacagt
ttcctgtga
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integrated database retrieval system
