Salvelinus namaycush (lake trout): 120054683
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Entry
120054683 CDS
T07522
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120054683 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
120054683 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120054683 (lsm4)
03041 Spliceosome [BR:
snh03041
]
120054683 (lsm4)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120054683 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
120054683 (lsm4)
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120054683 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120054683
NCBI-ProteinID:
XP_038858152
UniProt:
A0A8U1BSF6
LinkDB
All DBs
Position
Sna10:12045315..12053112
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgctaccgctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatcccagatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgagggggaggagcaggagcaggtagaggtgtatttggaggccgtggccggggt
atgccaggagtgggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga
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