Salvelinus namaycush (lake trout): 120054827
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Entry
120054827 CDS
T07522
Symbol
rexo1
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120054827 (rexo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120054827 (rexo1)
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
RNases
120054827 (rexo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
120054827
NCBI-ProteinID:
XP_038858404
UniProt:
A0A8U1BZM4
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Position
10:20090420..20100963
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AA seq
1318 aa
AA seq
DB search
MLRSTGFFRGIDCPFYTDSCNGKSGKYGCNRPYCHFRHSKYRRASYGSNDTRTSKELYSK
QKEQGGYDPFNPEVVRPEEQQNGEPAAATVDMGALELELVNRAIEAVRSEVEREKKKLSQ
IGDLEYDPSASSPKVLLKPLSQTGDQEYDPTASSPKVVQKPLSRTGDQEYDPTASSPKVM
ANWPKPQAVASYLAYDPGSYQMTTTADYNPTPRSSKYTLDSDSMDNHASSMEYVPTSVSK
TALKKPAPRTRSPHLPSPPTSPKYSNNAAFSKNKYTVDNSKPSTDMEYDPLSNYSAKIAV
KDKKDQRTGASKGEGKKRPHLPGTGKLSTDEEYVPTTKKPRQVIPDPLKYTASFSESDEE
SSGTEYRPTSLSRLQRRKSSSGSVEEASGPGKGERTERALGGLKQQRSLEAKEQEDSENQ
EVARQKDKPETEKVPGKTSHMKSIKVEKVHKSEKESSKKNGGSKEKGAGDGKKISDSKKS
SHETAKKDSKNQGKKEEEKSKMKDKSIDKGKEGQEEKRSDGKIKLRTDKVKGASSKSETE
KGGGDSKKLKTSDKEKDSSKFKEHKNGKHDSSGREKGSNKVSKGSSNSSNSSKDKVKKNS
RSFSDGKTGKVKQRSLSHVDLFGDESAEEKREEDDEEEKIVRKSAAAFKRGHLNKRNASE
LTPSSSEDDDVGPEDDRGYDDMDGGGVDYSGLQVDMDFDLDDDPMEECLRIFNESKDVKT
EDKGRQAKPSKDSDDEDATDSNQTTLFPGQKKRVSHFSAKGSTEATPKPPPYRRLTAQEI
CYQRMQIAQQQASQLAAAVKTASTPRPRPRPSLSPFPGERKRVAHRPNPLPSSSKSGLVE
AKLAGSRVLSPTRTLPGGVSVKAQTSAGILSKTTTTIAQKRVAHTPTMKSSAMKRPVIPT
EFGAKVPTNVRQRYLNNFIDECMKFCPSEDLAFQMALEEEKVVYDRSSSKNIYLNVAVNT
LKKLRSKSSSPTSPVARSPAVVGNRKAQSHEEVLGGRLAAKTSFTVNRTGKQQEEKLSGV
RLYRKLRDYLMTEEQLQEHGYPRPHPERSGRAVVHNVPEKKNVDPFAKVCYRCGAEYKIN
ANGNCVRKEECNHHWGRLRRHKVSGGWETNYNCCSGAVGSPGCSVSKQHVQDGRKESLDG
YVQTFEKQLPPDGNGGVYALDCEMCYTKQGLELTRVTVINSELKVIYDTFVKPESKVVDY
NTRFSGVTEEDLENATITLRDVQAVILNMFSTESILIGHSLESDLFALKVIHSTVVDTAI
VFPHRLGLPYKRALRNLMADHLKRIIQDSVEGHDSSEDACACMELMIWKIREDAKVKR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatccaccggtttcttccgtggaattgactgcccgttttacacggatagttgc
aatgggaaaagcggcaaatatggttgcaacagaccatactgtcacttcagacacagcaaa
tatagacgtgcgtcttatggctcaaatgacactagaacatcaaaagaactttactccaaa
caaaaggagcaaggtggctatgacccattcaacccagaggtagtaagaccagaggagcaa
cagaatggggagcctgctgctgcaacagtggacatgggtgccctcgagcttgagttggtc
aatcgtgctattgaggcggtacgcagtgaggtggagcgggaaaagaagaagctctcacaa
atcggggacctggaatatgacccttctgccagttctcctaaagtgttgctgaaaccactc
tcacaaactggagaccaggaatatgaccctactgccagttcccccaaggtggtgcaaaaa
ccactctcaagaactggggaccaggaatatgatcctactgccagttcccccaaagtgatg
gctaactggccaaaaccacaggccgtggcatcctacttggcgtatgacccaggcagttat
cagatgactacaacagctgactacaatcccacccctcgctccagtaagtacaccttggac
tctgacagcatggacaaccatgccagctccatggaatatgtgcccacctcggtttccaaa
acagctttgaaaaagcctgctcctcgaacacgatctcctcatctaccctctcctcctact
agtcctaagtactccaataatgcagccttctccaagaacaagtacacagtggataattct
aaaccatccacagacatggaatatgaccctctctccaactattcagctaaaattgctgtc
aaggataagaaagaccagaggacaggtgcttctaagggagaagggaagaaaagacctcac
ctgccagggacaggaaagctgtcaacggatgaggaatatgtgccaaccaccaagaagcct
cgacaggtgataccagacccactgaagtacactgccagtttctctgagtctgatgaggag
agctctgggacagagtatcgacccacctctctcagccgtctgcagaggaggaagagcagc
agtgggtcagtggaggaagcctctggtccagggaaaggagagaggacagaaagagctcta
ggtgggctgaaacaacagaggagtttggaggctaaagagcaggaagactcggagaaccag
gaagtagcaaggcaaaaagacaagccagagactgaaaaagtgccaggtaaaaccagccac
atgaagagcatcaaagtagagaaggtgcataaatctgaaaaggagtccagtaaaaagaat
ggtggtagtaaagaaaaaggagcaggggacggtaagaaaataagtgattcaaagaaatca
agccacgaaactgcaaagaaggacagcaagaatcagggaaagaaagaagaggagaaaagc
aagatgaaggataaatccatagacaaaggcaaggagggacaggaagaaaagagaagtgat
ggaaagattaagctaaggacagacaaagtaaaaggggcgtcaagcaagagtgagacagaa
aaggggggtggggatagtaaaaaactgaagacttcagacaaggaaaaggactcttcaaag
tttaaagaacacaagaatggtaaacatgacagcagtggaagagaaaagggctccaataaa
gttagcaaagggagttctaacagttctaacagcagtaaagacaaggtgaagaaaaacagc
agaagcttctcggatggcaaaacaggaaaggtgaaacaaagatctctgagtcacgtagat
ctgtttggggatgagagtgcagaggagaaacgcgaggaggatgacgaggaggagaaaatt
gtgaggaagtcagctgctgctttcaagagggggcatttgaataagaggaatgcctcagag
ctcaccccctcatcctcagaggatgatgacgttggtccagaggatgacagaggctatgat
gacatggatggtggtggggtggactactccggtttgcaggtggacatggactttgacctg
gatgatgacccaatggaggagtgcttacggatcttcaatgaatccaaggatgtgaagaca
gaggacaagggaaggcaagccaagccctctaaagattctgatgatgaggatgccacagac
agcaatcaaactactctctttcctgggcagaagaagagggtttcacatttctccgcgaaa
ggaagtactgaggcaacaccaaagcctccgccgtacaggagactgactgcccaggagatc
tgttaccagcgcatgcagattgcccagcagcaggcatctcagcttgcagcagccgtgaag
actgcctctacacccagacccagacccaggccaagcctcagccccttccctggggagagg
aagagagtagcccaccgccccaaccccttaccatcctcctccaagtctggtcttgtcgag
gcaaagctagcaggcagcagagtgttgtcgcccaccaggaccctcccaggaggtgtctct
gtgaaggcccagacatcagccggcatcttgtcaaagaccaccaccactattgcacagaag
agggtggcacacactcccacaatgaagagctctgcaatgaagcgcccagtgattcccact
gagtttggagccaaagtgcccaccaacgtccgccagcgatacctcaacaactttatagat
gagtgtatgaagttctgcccctctgaagacttggccttccaaatggccctggaggaggag
aaggtggtgtatgaccggagcagcagtaagaacatctacctcaacgtggcagtcaacaca
ctgaagaagctacgcagcaagagcagctcccccacctcacccgttgccaggagccctgca
gtggtggggaacaggaaggcccagtcccatgaggaagttctggggggacgcctcgctgcc
aagaccagctttaccgtcaacaggactggcaagcaacaggaggagaaactcagtggtgtc
aggctgtacaggaagctgagggactatctgatgacggaggagcagctgcaggagcatgga
taccccaggccacaccctgagcgctcaggtcgagccgtggtccacaacgtcccagaaaag
aagaatgttgacccttttgccaaggtgtgctatcgatgtggggccgagtataagatcaac
gccaacggcaactgtgttcgcaaggaggagtgtaatcatcactggggccgtctgcgcaga
cataaagtgtcgggaggctgggagaccaactacaactgctgctcaggggctgtgggctct
cctggctgctctgtgtctaagcaacacgttcaggatggacgcaaagaatcattggacggc
tatgttcagacctttgagaaacagctgcccccagacggcaatggtggagtctacgccctg
gactgtgagatgtgttacacaaagcagggtctagagctgaccagggtgactgttatcaac
tctgagctgaaagtcatctatgacacatttgtcaaacccgaaagcaaagtggttgactac
aacacacggttttcgggtgtaacagaggaggacctggagaatgcgaccatcaccctgaga
gacgtgcaggctgtgatcctcaacatgttcagcactgagtccatcctcataggacacagc
ctggagagtgacctcttcgccctcaaggtcatacacagcactgtagtggacacagccatc
gtgttcccccatcgcctgggcttgccatacaagcgtgccctgaggaacctcatggcagac
cacctcaaacgcatcatacaggacagcgttgaaggtcatgactccagtgaggacgcctgc
gcctgcatggagctcatgatatggaagatccgagaagacgccaaggtaaagagatga
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