Salvelinus namaycush (lake trout): 120054846
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Entry
120054846 CDS
T07522
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120054846 (fxr1)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120054846 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
120054846 (fxr1)
mRNA cycle factors
Stress granule specific factors
120054846 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
FXR_C1
Tudor_FRX1
KH_1
FXR_C3
Agenet
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
120054846
NCBI-ProteinID:
XP_038858437
UniProt:
A0A8U1BSX4
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Position
Sna10:21179400..21198226
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AA seq
677 aa
AA seq
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MHCMPNMDELTVEVRGSNGAYYKGFVKDVHDDSLAIAFENNWQPERQVPFSDVRMPPPAD
GKQDIGEGEEVEIFSRANEQEPCGWWLAKVRMMKGDFYVIEYAACDATYNEIVTFERLRP
VNINKAVSKSSFFKCTVPVPDDLKAACESEQAHKDFKKAVGACRIVYCTETSSLVVLSIN
EATVKRVSLLSDMHLRSIRTKLMLMSRNEEATKHLESTKQLASGFQEEFTVRVDLMGLAI
GSHGSNIQQARKVPGVTAIELDEGSGTFRIYGENEEAVKKARNYLEFLEDSVQIPRTLVG
KVIGKNGKVIQEIVDKSGVVRVRIEGDKDGTQPRQETQGMVPFTFVGTKENIGNVQVLLE
YHIAYLNEVEQLRMERLQIDEQLRQIGMGHRPSSGRPADKGYTTDDSVAATAVHTSRSYT
GRGRGRRGPNYTSGYGTNSEQSNASETDSERKDELSDWSLAGEEPERGTRPQRDSRRRAG
PGRGRGPRGRGAGRGAPNTALKDPYGNPYSVLDNTETDQTADTDASDSNLNTNRRRRSRR
RRTDEDTTVIDGMSESDNTSLSENGLDDSKDKPQRRNRSSRRSVRPPEERQPVTVADYIS
RAESQSRQTNQKELKNNKKELGQVECIAEHSLSAEANTSNGPSNGRGDEPGRASTERVAK
VAYQGNGDQQPVLNGVS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgcattgcatgcccaacatggatgaactgacggtggaggtccgtggctccaacggagca
tattataagggatttgtcaaagatgtccatgacgattcactcgctattgcctttgagaac
aattggcaaccagagagacaagttccctttagtgatgtccggatgccacctccagctgat
ggtaaacaggacatcggggagggagaagaggtggagatcttctcccgggccaatgagcag
gagccatgtggctggtggcttgccaaagtgcgcatgatgaagggagatttctatgtgatc
gagtatgctgcctgtgatgccacatacaatgaaatagtcacatttgaacgtcttcggcct
gtaaatatcaacaaggcggtgtcaaagagctccttcttcaagtgcacagtcccagttcct
gatgatctgaaagcagcgtgcgaaagtgaacaagcgcataaagatttcaaaaaggcagtg
ggagcttgtcggattgtctactgtacagaaacaagtagcttggttgtactgtccataaat
gaagccacagttaagcgagtgtctttgctcagtgacatgcacctgaggagcattcgtact
aagctcatgctcatgtcccgaaatgaggaggccactaaacatctggagagtacaaagcaa
ctggcgtctggtttccaagaggagtttacagtcagggtggacctcatgggccttgccatt
ggaagccatggaagcaacattcaacaagccagaaaagtgcctggagtcactgctattgag
ctggatgaggggagcgggacgttcagaatttacggagagaatgaggaggcagttaagaag
gcaaggaattatctggagtttcttgaagattctgttcagatccccaggaccttggtcggc
aaggtaattggcaagaatgggaaagtcattcaggagatcgttgacaagtctggagtggtg
agagttaggattgaaggggacaaggatggcacacagccacgtcaagaaacacagggaatg
gtcccgtttacatttgtcggcactaaggagaatattgggaatgtccaggtacttctggag
taccacattgcctacctgaacgaagtcgagcagctgcgtatggagagactgcagatagac
gagcagctgaggcagattgggatgggccacaggccttcatctggccgcccagcagacaag
ggctacaccacagacgacagtgtggctgctaccgccgtgcacaccagccgctcctacacc
ggcagaggccgcggacgcaggggccccaactacacctccggctatggcacaaactctgag
caatccaatgcctctgagactgactctgagcggaaggatgagctgagtgactggtccctg
gcgggagaagaaccggagagggggactcgaccacagagagacagcaggaggagagctggt
ccagggaggggtagagggcctaggggccgtggagcagggagaggagcccccaacaccgct
ctgaaggatccttatggcaacccatacagtgtgcttgacaacacagagacagaccagacg
gccgacactgatgcaagcgactccaacctcaacacaaaccgtcgccgccgctcccgccgc
cgccggactgatgaggacacaacagtgattgatggcatgagtgaatcggataacacttcc
ctcagtgagaatggccttgatgactcaaaagataaaccacaacggcgtaaccgtagcagc
agacgcagtgtccgcccaccagaggaaaggcaaccagttactgtggcagattacatatcc
cgtgctgaatcacaaagcagacagactaaccaaaaggaactgaaaaataacaaaaaagaa
ctggggcaggttgagtgtatcgcggagcacagcctatctgcagaagcaaatacaagcaac
ggccccagcaatggaagaggtgacgaaccaggcagggcttccacagaacgggttgccaaa
gtcgcttaccaagggaatggtgaccagcagcctgtcctgaacggggtttcctaa
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