Salvelinus namaycush (lake trout): 120055089
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Entry
120055089 CDS
T07522
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03320
PPAR signaling pathway
snh04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120055089 (rxrgb)
03320 PPAR signaling pathway
120055089 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120055089 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120055089 (rxrgb)
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120055089 (rxrgb)
Nuclear receptors [BR:
snh03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120055089 (rxrgb)
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Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
120055089
NCBI-ProteinID:
XP_038858912
UniProt:
A0A8U1ES48
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Position
Sna10:45327133..45429120
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AA seq
529 aa
AA seq
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METKLPPPRTSSDQLEVKAYGDVFYVGHRLLFQLHVNLKRSQSTSSPAAREVLFSGKVVR
LAPLSTPSGAMWHPKASASSGSPIRDLGYMHYSQGPMSMPHSHGPPMGGMVGHPSVISAS
RTLPSPMITLGAPMNGLASPYSVITSSLGLPSTPGINFGSLHSPQMREMNSVSSPEDIKP
PPGLQNLGDINYNCTSPGGMSKHVCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYT
CRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRERGENEVESTSSFNEEM
PVDKILDAELAVEPKTETSADEGPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELP
LDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVQRSSAHSAGVGSIFDRVLTEL
VSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLESYTKAKYPDQPG
RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaaactaaactgcctcctcctcgtacctcctcagatcaacttgaagtaaaagcctat
ggcgatgtgttttatgtgggccatcgcttattattccaactccacgtgaatttgaagagg
agtcagagtacgtcctctccagctgctagggaggttctgttctctggcaaggtggttcgg
ctggcacccctctccaccccctctggagccatgtggcaccctaaggcatcagcctcatct
ggaagccccataagggacctgggttatatgcactattcccaagggccgatgagcatgccc
cactcccatggccctccaatgggtggcatggtggggcacccctccgtcatcagcgcctcc
aggacccttccatccccaatgatcaccctgggcgcgcccatgaatggcctggcgtcgccc
tactccgtcatcacgtcctccctgggcttgccctccacgccaggcatcaacttcggatcg
ctccacagtccacagatgagagagatgaacagtgtcagtagtccggaggacatcaagcct
cctccgggtctccagaatctcggggacatcaactacaactgcaccagtcctggaggcatg
tccaaacacgtatgtgccatctgtggagaccgatcatcagggaagcactatggcgtgtac
agttgtgaaggctgcaaaggcttcttcaagagaaccatccggaaagacctcacctatacg
tgtcgagacagcaaggagtgcctgatagacaaacgacagcgcaaccgctgtcaatactgt
cgctaccagaagtgcctagccatgggcatgaagagagaagcggtgcaggaggagaggcag
cgggggagggagcggggggagaacgaggtggagtccaccagtagttttaatgaggagatg
cccgtcgataagattctggacgcagagcttgccgtggaacccaagacagagacatcagca
gacgaaggccctggcaactcgacaaacgacccagtcaccaacatctgccaggcagcagac
aaacagctgttcaccctggtggagtgggctaagaggatccctcacttctcagagctgccc
ttagacgaccaggttattctactacgagcaggctggaacgagctcctcatcgcgtccttc
tcacaccgctctgtcacggtaaaagacggaatcctattggccacgggtctccacgtccag
agaagtagtgctcacagtgccggagtgggctccatctttgacagagtcctgacagagttg
gtgtctaagatgaaagacatgcagatggacaagacagagctgggctgcctacgagccatc
gtcctcttcaacccagatgcaaaaggcctgtcaaatccacctgaggtggaagggctgagg
gagaaggtctacgcctcgctggagtcctacaccaaagccaagtacccagaccagcccggc
aggtttgctaaactgctgctgcgtctccccgccctgcgctccataggcctcaagtgtttg
gagcacctgttcttcttcaagctgataggagacacgcccatagacacctttctcatggag
atgctcgaagcgccacaccaaatcacatga
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