Salvelinus namaycush (lake trout): 120055152
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Entry
120055152 CDS
T07522
Symbol
frem1b
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120055152 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
snh04091
]
120055152 (frem1b)
Lectins [BR:
snh04091
]
C-Type lectins
Lecticans
120055152 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
DUF807
DUF7239
Motif
Other DBs
NCBI-GeneID:
120055152
NCBI-ProteinID:
XP_038859003
UniProt:
A0A8U1EMQ9
LinkDB
All DBs
Position
Sna10:9671838..9732267
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AA seq
2210 aa
AA seq
DB search
MAVAGVHSWMLLTLMAVLPHACAQQSLVRVNSGVQVGRGRSVFVTDKELQFNVDQTSDCK
VEVVLNEPVTQRVGKLTPQVFDCHFLPDEVKYIHNGSPLLEEDTVMLRVYRFTVSDTLVE
TVVLRMIVVEPESSLVELGSTPLVVPQFYGLSNAIDGGVLSIRSQPDVACTVRLLTPETS
VPSLGQLVTEEDPGLRKGRQTGDPCPGNKPCLHSTKEVRFLKATCHEFLSLALKYQHLSP
PSPEIDYIPIRVELRDQASRALLETEAVWLPVLIHGAMQNQPPQAAFMASFILEADQFIL
TPLTTAALDAKDGETPQERLVFNVTKPPAQGYIAHLDDHTKTCHSFIWQDLHEMKIAYQP
PNSSHTGRRNYEVEFQAIDGSYVASPPIMVHFSIRAAETNAPRVSWNMGLDLLEGQSRPI
TWEDLQIVDSDNIDAVYLVAVDGPLHGRLSVRGGKGFMFRIRDLQEGVVVYHHSDSDTTR
DHIVFRITDGRHSIRHKFPINILPKDDTAPFLINNVALEVQEGGEVLVEEYMLLASDLDS
SDDYILYQLLTFPRAGEVVKKAHPQQPGVPVKSFLQRDLFMGLVYYRHSGEESFEDTFDF
TLSDSHQPPNLSHRHTVVIHVFPVKDQLPVEVSGSVRSVTVRETDVVYLTQSHIHFRDTE
HPDTDLSFFITTPCFSRTRPGLPDAGRLFYTDSTHSMKKDPMVPVLKSFTQVRSPIYCAN
TLTCMXCAGIFILITNAYYYLTSRSNMCCVRQHAVNHMKVGYMPPIEDIGPEPLFVQFLF
SVSDHHGGTTTDLLFNVTVTPVDNQAPEVFTNLLRVEEGGGAFFTEEHLLVRDGDSLEDK
LRVGVQTTPIHGKLELQGRELRQGDTFILQDLRGLRVRYIHDDSETVEDTVGLTVTDGVN
SAHVFLPVQILPVNDEPPQLGPGLRGGLICEEGGLVQVTAEYLFATDADSDDARLIYMLA
RTPARGELQRGGVTVDKFSQQDILQGLIYYIHTGGEIGASPVSDSVTLIVSDGEAGGMDS
CCHGDALPPPVPLHGTLPVYDLNVTVLPVNNKAPVITMGDMFVVDEGSSACLCGGVLGAE
DPDTYPEELLFLLENPPLQGFLENTLPSPGFEKSNAGLRVVSFSLLHLRAGYINYVQADH
QGTEPTVDQLVISVSDGRHKSPPIPFYIIIHPTNDETPSLTLSNFTVIEGGIKELSPAIL
NALDLDAPADILTFTVLVTPAHGTLLNGIYGTELSRYKNMGPKLLLQSLMVHTFTMEELK
QGMRIMYMHDDTETLKDSFTVQLTDGRHTIQGTAHLRVLPVNDEKPRLLKNAGVEVDWMD
RRVISSVVLEAEDLDTPTSKLYYILNAGPRFGKLQVKVKAGWTDIGAGQNFTQEDVEFNR
LWYAHTTGTGFKGHDSIRFTLSDLDNESPPQSFFISVRTIQKGDIVLVTRPVTLMEGERL
ILTTDILLATDGAARPGEVLYTVSIPPKHGHVHAVQRPGMPFLSFSQLDVAAQRVCYTHD
NSHTAEQDSFSFVVTNGISSRSGSLHFTIEHSDRIPPSLNRNTGLQLTEGAVKSITPDHL
ELTDPDTAVGNLTYALTQPPQYGKLLLKGYPLTLPRFTQTDINNMDLAYQHYQGSLAQID
RFSLMPSDGTNRGYLEYGQLKEEPLVFTIQVEHVDRNPPSLVTKRIPSTVENLSGGPGDK
QGIYITSRDLQASDPDSPAQELEFTITRPPHFGYLENSLTGAYIKGRFTQRDLEQRAVLY
VIPTDMEVTGDSFEFRVTDPAGNTMLPEILQLTWSRVELSATCYRVCENAGMLQVQLTRS
GKSMDPAYIAIQVEDGTAKVGKDFTHSTASLIQFDSGVNVKTWNIYLKDDGLEENHETFT
VILNGPKNTVLGQRNSASVEIVDPRGGMCDPEDLRVEEDEKGVPSTAHVPQSPQLEEHVT
DIETDLLWESRPHPPRGDVPNRRPFLDYGDGEGEPQDQATQFHSQATRQLRLQGGSNSNS
NSRTVLHSGVKRKSEEKVWTFHALTPLRLEERRLPIPEPIPQVHPDLQVIPIWSWSGHRK
FLHEVRVGDAPQDDAPVPSPKQHRAGRQRKAGRSVSTSCPTGWSHYRRHCYILSPGVASW
SSAQRTCTLLFDSNLTSVQSKKDMAWLWKFAGKQAFWIGLSGSPGHWTWTDGRSLSFSRL
KRDRAQEQRPESAASRSTCVLAQSQKTWTPMTCTTAPERRYICSSPAQNH
NT seq
6633 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccggggtccattcctggatgttgttgaccctgatggctgtcctaccacat
gcctgcgcccagcagagtctggtgcgggtgaactcaggggtccaggttggccgggggagg
tctgtgtttgtgacagacaaggagctgcagttcaacgtggaccagacatcagactgtaag
gtggaggtggtgctcaatgagccggtgactcagagagtagggaaactcactcctcaggtg
tttgactgccatttcctgcctgacgaagtgaagtacatccataatggcagtcccctgctg
gaggaagacacagtcatgttgagagtatacaggttcacagtctccgacaccttggtggag
acggtggtgttgaggatgattgtggtggaacctgagagcagcctggtagagctgggcagc
actcccctggtggtcccccagttctacggcctgtccaacgccatcgacggcggcgtcctt
agcatccgcagtcagcccgacgtggcctgcaccgtgcggctgctcaccccagagaccagt
gtaccctccctggggcagctggtgaccgaggaggaccccgggctgaggaaaggcagacaa
actggagacccctgtccaggaaacaagccctgcctccatagcaccaaggaggtgcgtttc
ctcaaagccacctgccacgagttcctcagcttggctctgaagtaccagcacctgagtccc
ccatctccggagattgactacatccctatcagagtggagctacgggaccaggcctccaga
gcactgctggagacggaggctgtgtggctgcccgtgctgatccatggggccatgcagaac
cagcctccgcaggccgccttcatggcctccttcatcctggaggcggaccagttcatcctc
acccccctgaccacggccgcgctggacgccaaggacggagagaccccccaggagcgcctg
gtgttcaacgtgacaaagccccccgcccagggctacatcgcccacctggacgaccacacc
aaaacctgccactccttcatctggcaggacctacacgagatgaagatagcctaccagccg
cccaatagtagtcatacagggaggaggaactatgaggttgagttccaggctattgacggt
tcctatgtagccagcccacccattatggttcacttctccatcagagcagctgagacaaac
gcacccagagtctcgtggaacatggggttggatctgttggagggtcagtctcggccaatc
acctgggaggatctccagatcgtggacagtgacaacattgatgctgtctacctggtggcc
gtggacggacctctgcatggacgactcagtgtcagaggtggtaaaggctttatgttccgg
atacgggacctacaagagggtgtggttgtctaccatcactcggacagcgacaccacccgc
gaccacattgtcttccgcatcacagacgggcgccacagcatccgccacaagttccccatc
aacatcctgcccaaggatgacacggcgccgttccttatcaacaatgtggcattggaagtg
caggagggcggcgaggtgctggtggaagagtacatgctgctggcctccgacctggactcg
agtgatgactacatcctgtaccagctcctcaccttcccccgcgctggagaggtggtcaag
aaggcccacccacaacagccaggcgtgccagtgaagagtttcctgcagagggatctgttc
atggggctggtctattacagacactctggagaggagtcttttgaggacactttcgacttc
accctctcagacagccatcaacccccaaacctgtcccacagacacactgtggtgatccac
gtttttccagtcaaagaccagcttccggtggaggtgtctggcagcgttcgctcggttacg
gtgagggagactgacgtggtctacctgacccagagtcacatccacttcagggacacagag
cacccagacacggacctctccttcttcatcaccacaccctgcttcagccgcacacggcca
gggctacctgatgcagggcgactattctacacagacagcacccactccatgaagaaagac
ccaatggtccctgtgttaaagtcattcacccaggtacgctcaccaatatactgcgccaat
acactgacatgcatgtagtgtgcaggtatattcattttgattacaaatgcctattattac
ttaacctcacgcagcaacatgtgttgtgtccgtcagcatgcagtcaaccacatgaaggtg
gggtacatgccccccatcgaggacatcggaccagagccactgtttgtccagtttttgttc
tctgtgagtgaccaccacggtggaaccaccactgacctgctcttcaacgtcaccgtcact
cctgtggacaaccaggctcctgaggtgttcaccaacctactgagagtggaggaaggagga
ggggccttcttcacggaggagcacctgttggtgcgggacggggacagcttggaggacaag
ctcagagtaggggtgcagactacgcccatccacgggaagctggagctgcaggggcgagag
ctccgccagggtgacaccttcatcctccaagacctgagaggtctccgagtcaggtacatc
catgatgactctgagactgtggaggacactgttggtctaacagtaactgatggtgtcaac
tctgctcatgtgttcttaccagtccagatcctaccagtgaatgacgagcccccccaacta
ggaccagggctgcgtggcgggctgatctgtgaggaagggggcctggttcaggtcactgct
gagtacctgtttgccacggacgcagacagtgatgatgccaggctaatctacatgctggcc
cggacccctgccaggggggagttgcagagagggggggttactgtggacaagttctcccaa
caggacatcctgcaggggctcatctactacatacacacagggggcgagattggagccagt
cccgtgtctgactcggtcactctcatcgtgtcggacggagaagcagggggcatggacagc
tgttgccatggagatgccctgccaccacccgtacctctccacgggacacttcctgtttac
gacctcaacgtgacggtgcttcctgtcaacaacaaggccccagtcatcaccatgggtgac
atgtttgtggtggacgagggctcctcagcctgtctatgtgggggagtgctgggggccgag
gaccccgatacgtaccctgaagagctcctcttcctcctggaaaacccacccctacagggc
ttcctggagaacaccctgccctcaccaggcttcgagaagagcaacgcaggcctcagagtg
gtttcattcagcctgctccacctcagagcgggatacatcaactacgtccaggcggaccac
caggggactgagcccaccgtggaccagctggtgatcagtgtgagcgacgggaggcacaag
tctccccccatccccttctacatcatcatccaccccaccaacgacgagactccctctctg
acacttagcaacttcactgtgatcgagggagggataaaggagctgagtccggccattttg
aacgcgttggacttggacgccccggcggacattttgaccttcacagtattggttacccca
gcccacgggaccctgctgaacgggatctatggaacggagttgagccgctataagaacatg
ggccccaagctacttctgcagagcctgatggtacacaccttcaccatggaggagctcaaa
caaggaatgaggatcatgtacatgcatgatgacacggaaaccctgaaggactcgttcact
gtgcagctgacagatggccgccacacaatccaggggaccgctcacctccgtgtcctacca
gtcaacgatgaaaagccccggctgctaaaaaatgcaggagtggaggtggactggatggac
aggagagtgatctccagtgtggtgttggaggcagaagacctggacactcctaccagtaag
ctctactacatcctcaatgctgggcccaggtttggcaagctgcaggtcaaggttaaagct
ggctggacagacattggggcgggtcagaacttcacccaggaggatgtggagtttaaccgc
ttgtggtacgcccacactactggcaccgggttcaaaggtcatgacagcatccgtttcacc
ctcagtgacctagacaacgagtcccctcctcagagcttcttcatctcagtacgcaccatc
cagaagggtgacatagtgctggtcaccaggccggtcaccctgatggagggagagcggctc
atcctgaccacagacatcctactggctacggacggggctgccagaccgggggaggtgctc
tacaccgtgtccatcccgcccaaacacggacacgtccacgccgtccagcgtcccggaatg
ccgttcctcagcttctcccagctggacgtggcggcccagcgtgtgtgttacacccatgac
aacagtcacacagctgagcaggactccttcagcttcgtcgtcaccaacggcatcagctcc
cgcagcggctccctgcacttcaccatagaacacagtgaccggatcccgccgtccctcaac
cgcaataccggccttcaactgacagagggagcggtgaagtccatcacaccagaccacctg
gagctcaccgacccagatactgctgtggggaacctgacctatgccctcacccagcccccg
cagtacggcaagctgctcctcaaggggtacccactgacattaccccgttttactcagact
gatatcaacaacatggacctggcttaccagcactaccagggcagcctggcccagattgac
aggtttagtctgatgccgtctgatggtactaacagaggatacctggagtatggacagctg
aaggaagagccgctggtcttcacaatacaggtggagcacgtagacaggaatccccccagc
ctggtgaccaagaggatccccagtacagtggagaacctctcggggggaccaggggacaag
caaggcatctacatcacgtcacgtgacctccaggcctctgaccccgacagtcccgcccag
gaactggagttcaccatcacacggccgcctcacttcggctacctagagaactccctcacc
ggggcgtacatcaaaggacgcttcacccagagggatttggagcagcgcgccgtgctctat
gtcatccccaccgacatggaggtgacaggggacagctttgagttccgtgtcactgacccc
gcgggaaacaccatgctgcctgaaatactgcagctgacgtggtctcgggtggagctgtcg
gctacgtgttaccgggtgtgtgagaacgcaggcatgctgcaggtgcagctgacacgcagt
gggaaaagcatggacccggcctacattgctattcaggtggaagatggtactgccaaggtg
gggaaagatttcacccacagcacggccagtctgatccagttcgattcaggagtcaacgtg
aaaacctggaacatttacctgaaagacgacggcctggaagaaaaccatgagacgttcacc
gtgattctgaacggccccaagaacactgttctgggtcagaggaactcagccagtgtggag
atagtggatcctagaggaggaatgtgcgacccagaggacctgagggttgaggaagatgaa
aaaggagtaccttcaaccgctcacgtcccccagtccccacagctagaggagcacgtcact
gacattgaaacagacctgctgtgggagagccgcccccatccaccaaggggggacgtgccc
aaccggaggcccttcctggactatggggatggagagggggagccccaggaccaggctact
cagtttcacagccaggccaccagacaactcagactgcagggcggcagcaacagtaatagc
aacagtcgcacggtccttcattcaggtgtcaagagaaagagtgaagagaaagtctggacg
ttccatgcactcaccccactgagactagaggaaaggaggctgccgattccagagcccatc
ccccaggtgcacccggacctccaggtgatcccaatctggagctggtctggccacaggaag
ttcctccatgaggtgagggtgggggatgccccccaggatgatgcccctgtaccctcgccc
aaacaacacagggctggtcgccagcgcaaggctgggaggtcagtgagcacttcctgcccc
acgggttggagccactacaggaggcactgctacatcctgagccctggcgtggccagctgg
agcagtgctcaacggacctgcaccttactgtttgacagcaatctaacaagtgtccagtcg
aaaaaagacatggcttggttatggaaatttgctgggaaacaggccttttggatcggcctg
tcaggcagcccgggacattggacctggacggacggcagatccctgtcattctccagactc
aagagggaccgagctcaagagcagcggcccgagagtgctgcctctagatccacgtgtgtg
ttagcccaaagtcagaaaacatggacacccatgacctgcaccacggcaccagaacgcaga
tacatttgctcttcgccagcacagaatcactga
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integrated database retrieval system
