Salvelinus namaycush (lake trout): 120055197
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Entry
120055197 CDS
T07522
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120055197
Membrane trafficking [BR:
snh04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
120055197
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
Cupin_1
LRR_LRWD1
LRR_6
LRRNT
LRR_9
V-set
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
120055197
NCBI-ProteinID:
XP_038859047
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All DBs
Position
Sna10:complement(17490686..17492506)
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AA seq
606 aa
AA seq
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MAAGPGMGWPGLLLLLMTTVASTQSQGCPQRCECMAKLKSVACQGKRLSALPDSISSDTR
LLDMSGNMLRWVEHGDLLSYPRLEELDLSENIISVLEPNAFSSLQNLRVLSLRGNQLKLV
PMGAFSHLTNLTTLDLSGNKIVILLDFTFQDLKSLRNLEVGDNDLVYISNKAFLGLVGLR
QLTIERCNLTSISSQSLSYLRSLVTLRLRYLSISSLDDQNFRKLGGLRGLEIDHWPFLEH
ISPHSLQGLNLSWLSITNTNITSVPTAALRSLAHLTSLNLSYNPISVLESWALRDLVRLK
ELHLVNTNLMTVQPYALGGLRQIRLLNLSTNALVTLEEGAFQSVNTLETLRVDANPLSCD
CRLLWILQRRKTLNFEGKSPVCAGPMEVQGRALSAFSDSALFDHFTCQKPKIRNRKLQPV
TAREGQVVSFVCRAEGEPTPIIFWVSPQRRRITTKSTGRVIVLPEGTLEIRYAQVTDSGT
YICIASNAGGNATYFATLTVSALPLDAALMANRTYYTGDLNETNLNDTKVFLKFTLDLKT
ILISTAMGCCLFLGVVVFCFLMLFAWSRGRGQHKNNFSVEYSFRKVDGPAASGGQGGARK
FNMKMI
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggtccaggcatggggtggcctggcctgctcctgctgctgatgactactgtg
gcctccactcagagccaaggctgtccccagcgctgtgagtgcatggccaagctcaagtct
gtggcctgccaaggcaagcgcctgtctgccctccccgacagcatctcctcggacacacgc
ctgctggacatgagtgggaacatgcttcgctgggtggagcatggcgacctcctctcctac
cctcggctggaggagctagacctgagtgagaacatcatcagtgtcctggagcccaacgcc
ttctctagcttgcagaacctgagggtgctgtcgctgagggggaaccagctcaaactggtc
cccatgggcgccttctcacacctcacaaaccttaccacactagacctgagtgggaacaag
atcgtcatcctgttggacttcaccttccaggacctaaagagcctgaggaacctggaggtt
ggcgacaacgacctggtctacatctccaacaaggcattcctgggcctggtgggtctgagg
cagctcaccattgagaggtgcaacctgacctccatctccagccagtctctctcctacctt
cgcagcctggtcactctgcgcctgcgctacctcagcatctcctccctggatgaccagaac
ttccgtaaactgggggggctgcggggtctggagatcgaccattggcccttcctggaacac
atctccccccacagcctccagggcctcaacctgtcttggctgtccatcaccaacactaac
atcacctctgtgcccacagccgccctacgcagcctggcccacctcaccagcctcaatctc
tcctacaatcccatctcagtgctggagtcctgggcccttagggacctggtccggctgaag
gagctgcacctggtcaacaccaacctgatgacggtgcagccgtacgccctcggcggcctt
cggcagatccgcctgctcaacctgtccactaacgccctggtaaccctggaggagggcgcc
ttccagtccgtcaacaccctggagacgctgcgtgtggatgcgaaccctctgtcctgcgac
tgccgcctgctctggatcctccagcgcaggaagaccctcaactttgaagggaagtcccca
gtgtgtgcgggacccatggaggtgcagggcagggccctcagcgccttctcagactctgcc
ctctttgaccactttacctgccagaagcccaagatacgcaacaggaagctgcagcctgtg
actgccagggagggccaggtagtgtcctttgtgtgccgggcggagggagagcccacacct
atcatcttctgggtatctccccagcgccgtcggatcactaccaagagcactggacgtgtc
atcgtcctacctgagggaacgctggagatccgctacgcccaggtgaccgacagcggcacc
tacatctgcatcgccagcaatgccgggggtaacgccacctactttgccacgctgaccgtg
agcgcgctgcctctggacgcagcgctcatggccaaccgcacatactacacaggtgacctc
aacgagaccaatctgaatgacaccaaggtcttcctcaagttcaccttggacctcaagaca
atcctgatatccacagccatggggtgttgcttgttccttggggtggtggtcttctgtttc
ctgatgctgttcgcatggagccggggccgggggcagcacaagaataacttctcagtagag
tactccttcagaaaggtagatggccctgctgccagtggcggacagggaggggcccgtaag
ttcaacatgaagatgatttga
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