Salvelinus namaycush (lake trout): 120055320
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Entry
120055320 CDS
T07522
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120055320
04020 Calcium signaling pathway
120055320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120055320
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120055320
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120055320
NCBI-ProteinID:
XP_038859124
UniProt:
A0A8U1C0M5
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All DBs
Position
Sna11:complement(27693146..27772181)
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AA seq
2280 aa
AA seq
DB search
MDSRDSGDPERGEDGGDTASGTGSGTLKQTKAARARTMALYNPIPHRQNCLTVNRSLFIF
AEDNLIRKTAKRIIEWPPFEWVILATITANCIVLALEQHLPGEDKTPMAKRLECTEPYFI
GIFCFEFGIKLVALGFVFHKGSYLRNGWNIMDFIVVVSGILATAGAHMNIPVDLRTLRAV
RVLRPLKLVSGIPSLQIVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYSGKLHHTCL
PTADILENETMDTTEVEFACGVRKCPEKYDCVGSWIGPNDGITQFDNILFAVLTVFQCIT
MEGWTAVLYNTNDALGFMWNWIYFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAF
MKLRRQQQVERELNGYRAWIDRAEEVMLAEENKKSGRSALDVLKRATSKNAKRRGGPGDA
EISTIGAPRMRIRTVRRGPVAYMRRKERMLRISLRRMVKTDTFYWTVLSLVFLNTICVAI
VHHNQPDWLSTFLYYAEFVFLGLFLAEMFLKMYGLGFRLYFHSSFNCFDCGVIVGSIFEV
VWGFFRPGMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLLFLFIV
VFALLGMQLFGGRFIFEDYTPTNFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVQYG
MWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEEEEFFNARYARGTDGPMS
EYFSNRRDRRRRGGGGGRGGRSVWEQRANQLRKRRQMESQEVLFGGSPTEDTTDTPTTAY
RAPTLSPDASPGHLPESPMSGIMPMPEPPMSIAIPLPEPPDSEPVPLFTLAEERAVNHRP
TGGERRHRVARKSRPGPGGAEEGGAARHRRHRHREARAEAKSRESPHEEVSESGSRERKI
LEEREEKEEKEEKEDKGEFAEVEGGVSGKDEGGALIINLESEEEHLRVCIADIPEPPLCD
NFPEYLPPPLLELPPQMEEGEVGETGQCEPLSQDPPVEPAPEQFADPSELQAAAGVSDSE
NNQASLNLEEGKESEQGPDSQTSVIIEMSGAQPLLEVTPMTALHSSKEVEVYHRERKEKK
EEEESQVEKEEDEEASPPKPVPPGSMFLFKASNPIRRICHYVVTMRYFEMTILLVIVASS
IALAAEDPVCTNSDRNRVLRYFDYVFTGVFTFEMIIKMTDLGLLLHDGSYFRDLWNILDF
IVVVGALIAFALTNVIGNNKGRDIKTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVTSLK
NVFNILIVYQLFMFIFAVIAVQLFKGKFFYCNDSSMDTEKECQGYYIDYARDKKEVKKRE
WKRHEFHYDNVCWALLTLFTVSTGEGWPQVLQHSVDVTEEDMGPSRGNRMEMSIFYVVYF
VVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFTISAKPLTRYMPQNRQTF
QYRLWHFVASPSFEYTVMVMIALNTVVLMMKYYSAPAAYDTVLKHLNTAFTVLFSLECIL
KIMAFGFVNYFRDTWNIFDFITVLGSITEIIVDLQSINTFNMSFLKLFRAARLIKLLRQG
YTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLNDENHINQHNNFKTFS
GALMLLFRSATGESWQEIMLSCLGGQECEPDSSMAPMTMSPDHEGGCGTDFAYCYFVSFI
FFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRVWGEYDRAACGRIHYTAMYEM
LTHMSPPLGLGKKCPRGMAYKRLVLMNMPVDEDMSVHFTSTLMSLIRTALEIKIARGGED
RVALDTELQKEISVIWPYLPQKTLDVLVPINKDSDMTVGKIYASMMIMDYFKQNKAKKLR
AQLEAQKASLMPFQRLDASTLSEDILSNAQPLPCMPHSAGSALTRGGLVALSPLSPQDLL
NMQPMTSDTDTRSQHSRVSAGECSGLIPDPLELPFGRGLCVRASSMPRLSVEPQVLPSDH
TDSSRGRKGPGQQGGPRTEMASGSMKRSSSTVADQRVNGLWQEEKKSPDRLYRPRHKSYK
AAVSRSERKRQLDTEKERGRSKERRHLLSPDTSRCTSEERSLQPSHSPSRDRTHPLDKQG
NSSDSPIPTSESSTPSRRPLSQTSTRSHPHISYSPLVCRTHPPSGDDDDDRGSPETQRRG
EASREGAGGEGQSGARGRRHQQGSPLRRYPSEPYLALQEDEHSLDPTGFMETLTFEAAVA
TSLGRANTVSSTSSSSFSSARRGSRSGWQVPNGHFRKRLAQTVSVAGCEPLSDTEEDDRC
NT seq
6843 nt
NT seq
+upstream
nt +downstream
nt
atggattcccgagactccggggacccggagcgcggggaggacggcggggacacggcttca
ggtacagggtcagggacgctaaaacaaaccaaagcggcgagggcgcgcaccatggctctc
tacaaccctataccccaccggcagaactgcctcactgtcaacaggtcgctcttcatattc
gccgaggacaatttaattcggaaaaccgccaagaggatcatagaatggccaccgtttgag
tgggtgatcctggcgaccatcacggccaactgcatcgtcctggccctggagcaacatctt
cctggggaggacaagacccccatggccaaaagactggagtgtactgagccttacttcatt
gggatcttctgttttgagtttggcatcaagcttgtggccctgggctttgtgttccataaa
ggctcctacctgaggaatggatggaatatcatggacttcatcgtggtggtcagcggaatc
ctggctacagcaggggcccacatgaacatccccgtggacctgcggactctgagggcggtg
cgagtcctgaggcctctcaaactggtctctgggatccctagcttgcagatcgtgctgaag
tccatcatgaaggccatggtgcctctgctccagatcggcctgctcttgttcttcgccatt
ctcatgttcgccatcatcggcctggagttctacagcgggaagctccaccacacctgtcta
cctacagctgacatcctggaaaatgagacgatggatacgaccgaggtggagtttgcgtgc
ggagtcaggaagtgtccagagaagtacgactgtgtcgggtcatggatcggccccaacgac
ggcatcacccagtttgacaacatcctgttcgctgtgctcactgtcttccagtgcatcacc
atggagggatggacagctgtactctacaataccaatgatgccttgggctttatgtggaat
tggatctactttattcctctcatcatcatcggctctttcttcgtactcaacctggtgttg
ggagtcctctccggggagtttgccaaagagagggagcgggtggagaaccgtagagccttc
atgaagctgagacgccaacagcaggtagagagagaactcaacggatacagagcctggata
gaccgagcagaggaggttatgctggctgaggagaacaagaagtcggggagatctgcttta
gatgtgctgaagcgggccaccagtaaaaatgcaaagcgtagaggaggtcctggggatgcg
gagatatccactataggagcacctcgtatgcggatccgtacggtgcgacgtggcccggtg
gcgtacatgcgtcgtaaggagcgtatgctgcgtatctccctgcggcgcatggtgaagaca
gacaccttctactggactgtcctcagcctggtgtttctcaacaccatatgtgtggccatt
gtccaccataaccagccagactggctctccaccttcctgtactatgcagaatttgttttc
ctggggctcttcttggcagagatgttcttaaagatgtacggcctgggtttccgcctctat
ttccactcctcattcaactgctttgactgtggagtgatagttggcagcatctttgaggtg
gtgtggggcttcttccggcctggcatgtcctttggcatcagcgtccttagggcgctgaga
ctcctgaggatctttaagatcaccaagtactgggcatcactgaggaacctggtggtgtct
ctcatgagttccatgaagtccatcattagtctgctctttctcctcttcctcttcattgtc
gtcttcgccctgcttggcatgcagctctttgggggcaggttcatctttgaagattacact
cctaccaactttgacacgtttccagctgccatcatgacagtgttccagatcctgactggt
gaggactggaatgaggtgatgtacaatgggatccgctcccaaggaggagtgcagtacggc
atgtggtcctccatatacttcatagtgctcaccctgtttgggaactatacactgctcaac
gtcttcttggccatcgctgtggataaccttgccaacgcacaggaactcaccaaggacgaa
gaggaggaagaggagtttttcaatgcaagatacgccagaggcacagatggcccgatgtct
gagtacttctccaaccgccgtgaccgacggaggagggggggaggaggaggaagaggagga
aggtccgtgtgggagcagagggccaaccagctacgtaagcggcgccagatggagagccag
gaggtcctgttcggaggcagccccaccgaggacaccactgacacccctaccaccgcctac
cgcgcccccaccctctccccagacgcaagccccggtcacctgcccgagtcgcccatgtcc
gggatcatgcccatgcctgaacccccgatgtccattgccatcccgctaccggaaccccca
gactcggagcctgtgcctctgtttacgttagctgaagagagagcggtgaaccatcgcccc
acaggtggggaaaggagacacagggtggcccggaaatccaggcctggtcctgggggggcg
gaggagggaggggcggcgcggcataggaggcaccgtcaccgtgaggcccgggctgaggcc
aagagcagagagtccccacatgaggaggtcagcgaatcaggcagccgcgagaggaagata
ttggaagagagggaggagaaggaggaaaaagaggagaaggaggacaaaggagagttcgct
gaggtggagggaggagtgtcaggcaaggatgaaggaggagcccttattatcaacttagag
agtgaagaagagcatctgagggtgtgtattgcagacatccctgagcctcccctatgtgat
aacttccctgagtacctacccccacccctgctggaacttccaccccagatggaggagggt
gaggtgggggagactgggcagtgtgagcccttgtcccaggaccctccagtggagccagcc
ccagagcagttcgcagacccctcagagctccaggcagcagcaggggtcagtgactcagag
aacaaccaagcctccctgaaccttgaggagggtaaggagtcagagcaaggcccagacagc
cagaccagtgtgatcatagaaatgtctggagcacagccactgctggaggtcacccccatg
acagctttacacagcagcaaggaggtggaggtgtaccatcgtgagaggaaggagaagaag
gaggaggaggagtcgcaggtggagaaggaggaggatgaggaggctagcccgcccaaacct
gtacctcctggcagcatgttcctcttcaaggcctccaacccgatcaggaggatctgtcac
tatgtggtgaccatgcgctactttgagatgaccatcttgctggtgatcgtggctagcagc
atcgctctggctgctgaagaccctgtgtgcaccaactctgacagaaacagggttctccgt
tactttgattacgtctttactggagtcttcacgtttgaaatgattataaagatgactgac
ctgggactgcttcttcatgatggctcctacttccgtgacctgtggaacattctggacttc
attgtggtggtgggagctctaatcgccttcgctctgacgaatgtgattgggaacaacaaa
ggcagagacatcaaaaccatcaagtccctcagggttctgagagtcctacgacctctgaag
accatcaagagactccccaaactcaaggcggtgtttgactgtgtggtgacgtctttgaag
aacgtcttcaacatcctcatcgtctaccagctcttcatgtttatcttcgctgtcatcgcc
gttcagctcttcaaaggaaagttcttttactgcaatgacagctccatggacacagagaag
gagtgccaaggttactacattgactacgctcgagacaagaaggaagtgaagaagagggag
tggaagaggcatgagttccactatgacaacgtgtgctgggctctgctcactctcttcact
gtttcaactggagagggctggccgcaggttctgcagcactctgtggacgtgacagaggag
gacatgggtccaagtcggggcaacaggatggagatgtccatcttttacgttgtctacttt
gtggtcttccctttcttctttgtcaacatcttcgtcgctctcatcatcattaccttccag
gaacagggtgataagatgatggaggagtgtagcttggagaagaacgagagggcatgcatt
gactttaccatcagtgccaagcccctgacgcgctacatgccccagaacaggcagaccttc
cagtaccggctgtggcactttgtggcgtcaccatcgtttgagtacacagtgatggtcatg
atcgccctcaacactgtggtgctcatgatgaagtactactcagctccagcagcatatgac
acggtactgaagcacctgaacacagccttcaccgttctcttctccctggagtgtatcctc
aagatcatggcctttggttttgtgaactattttcgagacacttggaacatttttgacttc
atcactgtgctcggcagcatcactgagatcattgtggatttacagtcaataaacacattc
aatatgagtttcctgaagctgttccgggctgccagactgatcaaactgttgaggcagggc
tacaccatacgaatcctgctctggacctttgtacaatccttcaaggctcttccttatgtt
tgtctgctcatcgccatgctgttcttcatctatgccatcattgggatgcaggtgtttgga
aacatcaagctgaacgatgaaaaccatatcaaccagcacaacaacttcaagaccttctcc
ggtgcactgatgcttctcttcaggagtgcgacgggggagtcatggcaggagatcatgcta
tcgtgtctgggggggcaggagtgtgagccagactcctccatggcgcccatgaccatgtcc
cctgaccacgagggaggctgtggtactgacttcgcctactgctactttgtctccttcatc
ttcttcagctcttttctgatgctgaatctgtttgtggctgtgatcatggataactttgag
tatctgaccagagactcttccatcctgggtcctcatcacctggatgagtttgtccgtgtc
tggggagagtacgaccgcgcagcatgtgggcgtatacactacaccgccatgtatgagatg
ttgacccacatgtctccacccctgggcctggggaagaaatgccccagaggtatggcctac
aagaggctggtgttgatgaacatgcctgtggatgaggacatgtcagtccacttcacctcc
accttgatgtctctcatccgcaccgctctggagatcaagatcgcacgaggtggggaggac
cgagtagctctggacactgagctacagaaggagatcagtgtgatatggccatacctcccc
cagaagaccctggatgtactggtgcccatcaacaaagattctgacatgacagtaggtaag
atatatgcctccatgatgatcatggactacttcaaacagaacaaagccaagaagctgaga
gcacagctggaagcacagaaggccagtctgatgccgttccagcggctggatgcctcgacc
ctctctgaagacattctgtccaatgcccagcccctgccctgcatgccccacagtgctggc
tccgccctgaccagaggaggcctggtggcgttgagtcctctctccccccaggacctgctc
aacatgcagcccatgacctctgacacggataccagaagccaacactccagggtgagtgca
ggggagtgcagtgggttgattcctgacccactggagctcccatttggcagggggctgtgt
gtacgggcttcctccatgcctcgtctgtctgtagagccacaggtactgccctctgaccac
actgactcctccaggggccggaagggcccggggcagcaagggggccccagaaccgagatg
gccagtggctctatgaagcggtcctcgtccactgtggctgaccagagggtgaatggcctg
tggcaggaggagaagaaaagtcctgatagactgtacagaccacgccacaagagctacaag
gctgccgtgtcgcggtcagaaaggaagaggcagttggacacagagaaggagcgcgggagg
tctaaagagcgccgccacctcctctccccagacacgtcccgctgtacctccgaggagagg
agcctgcaaccctcacactcccctagccgtgatcgcacacaccccctggacaaacagggc
aacagctccgacagccccatccccacctctgaatctagtactcctagccgtcgccccctg
tcccagacctcaacacgctcccatccccacatctcttactctcctctggtgtgtcgcacg
caccctccctcaggggacgatgatgacgacaggggcagcccagagactcagaggcgaggg
gaagcctccagagagggggcagggggagagggacagagtggggcgaggggccgtcgccac
cagcagggctctcccctgcgtcgctacccgtcggagccctacctggccctgcaggaggac
gagcacagtctggaccccaccgggttcatggagacgctgactttcgaggcggcggtagcc
accagcctgggacgtgctaacacggtcagctccacatccagctccagcttcagctccgct
cgacggggttccaggagcggctggcaggtccccaacggacacttccggaaacgcctggct
cagacggtctctgttgcgggctgtgagccactcagcgacacagaagaggacgaccgctgc
tag
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integrated database retrieval system
