Salvelinus namaycush (lake trout): 120055348
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Entry
120055348 CDS
T07522
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120055348
Membrane trafficking [BR:
snh04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
120055348
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_LRWD1
LRRNT
LRR_6
LRR_9
C2-set_2
V-set
Motif
Other DBs
NCBI-GeneID:
120055348
NCBI-ProteinID:
XP_038859147
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Position
Sna11:31976603..31978765
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AA seq
622 aa
AA seq
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MTGSPGISGQSLSPWRWLSLWGPVLLLVTMTTLLPGCCQACPPRCECSAQIRSVLCQRRR
LTGIPEGIPTETRLLDLSRNRLRWVEMGDLAPYPHLEEVDLSENLIATLEPNAFANLQSL
RVLRLRANQLKLVPMGAFAKLVNLTTLDLSENKLVILLDYTFQDLRSLRHLEVGDNDLVY
ISHEAFSGLLGVEDLTIERCNLTSISGQTLSYLRSLVTLRLRQLSIPALEDQNFRKLANL
RVLEIDNWPYLEYISPLSFQGLDLYWLSITNSNITSVPSSSFRNLIHLTHLNLSYNPITT
LEPWAFRDLLRLKELIMVNTGLATVEPHSLGGLRQIRVLNFSSNDLQTLEEGSFHSVNSL
ETLRVDGNPLLCDCRLLWILQRRKTLNFDGRVPVCAGPVEVQGNSLSTFTDSALFDHFTC
QKPKIRNRKLQQVTAREGQPVSFLCSAVGEPAPNIMWISPQRRLITAKSNGRITVLPGGT
LEIRYAQVTDSGTYMCIASNAGGNDTYFAMLTVRGAPLDASSAFFANRSMYGGDFFNDTN
LNSTRVFLKFTLDLTTILVSTAMGCITFLGVVLFCFLLLFAWSRGRGQRKNNFTVETPFR
KAEGPAAVGGAGGARKFNMKMI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgactggctccccgggcatcagtgggcagtccctgtcgccatggcggtggctgagtctc
tgggggccggtcctgctgctggttaccatgacaaccctactgccaggttgttgccaggca
tgccctccacggtgcgagtgctcggcccaaatccggtccgtcttgtgccagcggcggcgg
ctcaccggtatcccagagggcatccccacggaaactcgcctcctggacctcagccggaac
cgtctccgctgggtggagatgggtgacctggcgccgtatccgcaccttgaagaagtggac
ctgagtgagaacctcattgccacactggagcccaacgcgttcgccaacctgcagagcctc
cgggtgttacggctgagggcgaaccagttgaagcttgtacccatgggggccttcgccaag
ctggtcaacctgaccacgctggacctgagtgagaacaagctggtgattctgttggactac
accttccaggacctgaggagtctaagacacctggaggtgggagacaatgacctggtctac
atctctcatgaggccttctctggcctgttaggggtggaggatctgaccattgaacgctgc
aacctgacttccatctctggccagacgctgtcctacctacgcagcctggtcactttgcga
ctacgccagctcagcatccccgccctggaggaccagaacttccgtaagctggccaacctg
cgggtactggagattgacaactggccctacctggaatacatctcccccctgagcttccag
ggtctggacctgtactggctgtccatcaccaacagcaatatcacctccgtcccctcgtcc
tccttcagaaacctgatccacctcacccatctcaacctctcctacaaccccatcaccacc
ctggagccttgggctttcagggacctgctgaggctcaaagagctgatcatggtgaacacg
ggcctggctacggtggagccccactccctgggaggcctcagacagatccgggtcctcaac
ttctcctccaatgacctccagaccctggaggagggatcgttccactctgtcaacagcctg
gagacgctgcgggtggatgggaacccgctgctgtgtgactgccgtttgttgtggatcctg
cagagacgcaagaccctcaactttgacggcagggtgcctgtgtgcgctgggccggtggag
gtgcaggggaacagcctcagcaccttcaccgactcagcgctctttgatcacttcacctgc
cagaagcccaagatacgcaaccgcaagcttcaacaagtgacggctcgtgagggccagcca
gtgagtttcctctgcagtgctgtgggagagcccgcccccaacatcatgtggatctcccct
cagcgccgactaatcacagccaagagcaatggccgcatcaccgtcctcccaggagggacg
ttggagatccgctatgcccaggtcaccgacagcggcacctacatgtgcatcgccagcaat
gccgggggaaatgacacttactttgcgatgctcacggtccggggcgcgccgctggatgcc
tcgtcggccttcttcgccaaccgctcgatgtacggcggcgacttcttcaacgacacaaac
ctgaatagcactcgcgtcttcctcaagttcaccctggacctgaccaccatactggtctcc
acagcgatgggctgcatcaccttcctgggcgtggtgctcttctgtttcctgttgttgttt
gcatggagccgggggcggggtcagcgtaagaacaacttcaccgtcgagacccctttccgg
aaggccgaggggccggcggcggtgggtggcgccggaggggcccggaaattcaacatgaag
atgatatga
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