Salvelinus namaycush (lake trout): 120055737
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Entry
120055737 CDS
T07522
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03410
Base excision repair
snh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120055737 (zgc:110269)
03410 Base excision repair
120055737 (zgc:110269)
03450 Non-homologous end-joining
120055737 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120055737 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120055737 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120055737 (zgc:110269)
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120055737 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120055737 (zgc:110269)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120055737 (zgc:110269)
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120055737 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
Csm1_N
Motif
Other DBs
NCBI-GeneID:
120055737
NCBI-ProteinID:
XP_038859600
UniProt:
A0A8U1BMH7
LinkDB
All DBs
Position
Sna11:complement(6344324..6352981)
Genome browser
AA seq
351 aa
AA seq
DB search
MGITKLADLIRSDAPGAISYKEICDYTGKVVALDTFIVLNQFRTAVPNLQFQGPLTGLFF
RTLTFLEHDIKPLFVFDGKPPGEKSAVLEKRAQAAGWSSPSRSGAVSPQTRDCLHLLELM
GVPIIQAPGDGEALCAHLVKQGVVDAVASEDMDTLPFGGNILIRQLNAKKNSEVIEYSLP
KLLEILKITHEEFVDLCILLGCDYCDKITGLGPKRALTLIQQHRNIENVVLNINRKTHPV
PLFWQYQDARKLFLDAPLTELPNLVWNEPDEEALVHFLCHEKHVKEQRVRGRMQKFSEKR
ERLRKEREEDKAAGQSRQTRMEDFFRVTRKRQQPSETGDSIGTKEKRARSK
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgggtattacaaaactggcagatttgattcgtagcgatgcacctggtgctatttcttac
aaagagatctgcgactacacaggaaaggtcgttgcgttggacaccttcattgttctgaac
cagttccgcactgcagtaccaaatcttcagtttcagggtcccttgacaggtttgttcttt
cgaacgctaaccttcctggagcatgacatcaaaccattgtttgtgttcgatgggaagcct
cctggcgagaaaagtgctgtgttggagaagagggcacaggctgcaggctggagctccccc
agtcgttcaggagcagtgtcccctcagacacgggactgtctccaccttctggagcttatg
ggtgtgcccatcatccaggctccaggagatggcgaggcactatgtgcccacctggtgaaa
cagggcgtagtagacgcggtagcatcagaagacatggacactctgccctttggtggaaac
atcctgatccgccagctcaatgccaagaaaaacagcgaagtcattgagtactctctgccc
aagctgctagaaattttgaagataacacatgaagagtttgtggacctgtgtatcttgttg
ggctgtgactactgtgacaaaatcacaggccttggacctaagagagctctgactctgatc
cagcagcaccggaacatagagaacgtggtgctgaacatcaacagaaagacccaccctgtc
ccactgttctggcagtatcaggatgcccgcaagctgtttttggatgcccccctgaccgag
ctcccgaacctggtctggaatgagccagatgaggaggccctggtccactttctgtgccac
gagaaacacgtcaaggagcaaagggtacgaggtcgaatgcagaagttcagtgagaagcgt
gaacgcttgaggaaggagagggaggaggacaaggcagcaggacagagccgacaaactcgc
atggaggacttcttccgtgttacacggaaaaggcaacagccgtctgaaactggggattcc
attggcaccaaagaaaagagagcgaggtcaaagtga
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