Salvelinus namaycush (lake trout): 120055828
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Entry
120055828 CDS
T07522
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03320
PPAR signaling pathway
snh04148
Efferocytosis
snh04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120055828
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120055828
03320 PPAR signaling pathway
120055828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120055828
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120055828
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120055828
Nuclear receptors [BR:
snh03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120055828
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
120055828
NCBI-ProteinID:
XP_038859745
UniProt:
A0A8U1C3A6
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Position
Sna11:complement(12085451..12137108)
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AA seq
474 aa
AA seq
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MDNTESCLHLNSSVQVSHLSSTPSQPLSIMVGPPHPHHHHHPSVISTTINPGRPRTSLIS
TLGSPFNGLGGSPYSVITSSSLGSPGVSMPHTPMPHTPTIGFSTLSSPQINSLNSVSSSE
DIKPPPGLAGLGHMNSYGCMSPGSMSKHICAICGDRSSGKHYAVYSCEGCKGFFKRTIRK
DLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRDKSDNEVESTSS
YNGDMPVEKILDAELAIEPKTEAYMEASTGNSKNDPVTNICQAADKQLFTLVEWAKRIPH
FSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDR
VLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPTEVEALREKVYASLESYTKHRY
PEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggataatactgaatcgtgtctacatctaaattcttctgttcaggtctcccacctgagc
tccaccccctcacagccccttagcatcatggtgggcccccctcaccctcaccaccatcac
cacccctccgtcatcagcaccaccatcaaccccgggcggccccgcacatccctcataagc
accctgggctcgccgttcaatgggctgggcggctcgccgtactccgtcatcacgtcgtcc
tctctgggctcgccaggtgtctccatgccccacacgcccatgccccacacgcccaccata
ggcttcagcacgctctccagcccacagataaactctctgaacagtgtgagcagcagtgag
gacatcaagcctcctccaggcctggctggactgggtcacatgaacagctacggctgcatg
agcccagggtccatgtccaagcacatctgtgccatctgtggggaccgatcctcagggaaa
cactatgccgtgtacagctgtgaaggctgtaaaggcttcttcaagagaaccatcaggaag
gacctcacctacacgtgtcgagacagcaaggagtgcctgatcgataagcgccaacgcaac
cgctgccaatattgtcgctaccagaagtgtctggccatgggcatgaagagagaagcagtg
caggaggagcgtcagcggggccgggacaagagtgataacgaggtggagtcaaccagtagt
tacaacggggacatgccggtcgagaagatattggacgcggagttggccatcgaacccaag
actgaagcttacatggaagccagcacaggcaactctaagaacgacccggtcaccaacatc
tgccaggcagcagacaagcagctattcaccctggtggagtgggccaaaaggatcccccac
ttctctgagctgcccctggacgaccaggtcatcttattacgagcaggctggaatgagctg
ctcatcgcctcgttctcccaccgctctgtgacagtgaaggacgggatcctcctggccacg
ggcctccacgtccaccgcagcagcgcccacagcgcaggagtgggctccatctttgacaga
gtgctgacggagctggtgtctaagatgaaagacatgcagatggacaagactgagttgggc
tgcctccgagccatcgtcctcttcaacccagatgccaagggcctgtctaatcctacagag
gtggaagccctgagagagaaggtgtacgcctcgctggagtcctacactaaacacagatac
ccagagcagcctggcagatttgccaagctgttgctgcgtctgcctgcactgcgctccatc
ggcctcaagtgtctggagcacctcttcttcttcaagctgataggagacacgcccatagac
acgttcctcatggaaatgcttgaagcgccgcaccagatcacatga
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