Salvelinus namaycush (lake trout): 120055869
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Entry
120055869 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04115
p53 signaling pathway
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120055869
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
120055869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120055869
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120055869
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120055869
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120055869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_DCAF4
Beta-prop_EML
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
zf-RING_10
zf-rbx1
WDR90_beta-prop_4th
UvrD-helicase
zf_C2H2_10
Sina_RING
Motif
Other DBs
NCBI-GeneID:
120055869
NCBI-ProteinID:
XP_038859825
UniProt:
A0A8U1BMW2
LinkDB
All DBs
Position
Sna11:17146352..17180708
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AA seq
715 aa
AA seq
DB search
MSSNRQQQTGGGAGPGPGSSSSTGGTTNANGATSVTLGGNDSANVNNSPNVVPSRTLATA
GEGLLVPGVAVQSPRSLAPLSRSSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQ
RSDEKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLGLLVQKKKQLEAESQAAQRQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPVSDMDRNLDSTVPNFEA
PSPAPSSLIDSTEYVSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSDRM
TRITDDTRNLNQLDDFMECLSKFTRFNSVRPLATLSYASDLYNGSSIVSSIEFDRDGDYF
AIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVI
LWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKA
NVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSA
STDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLL
TFKFDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGDSNVLIAANSQGTIKVLELV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggagcaggtcctgggcctggaagtagc
agcagtaccggtggcactaccaatgctaacggtgctaccagcgtaacgttaggcggcaac
gatagtgcgaatgtgaacaattctccaaacgttgtgccctcgcggactctggcaacagct
ggcgaggggttgcttgtacctggagtggctgtacagtctccaagaagcttagccccacta
agcagatccagttcatcctcctctggcaccagcagaaaacgtcctctccaccaagcacct
ctctacaatggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatc
tgttttgaaatgattgaggaggcacatatgacaaaatgtggacacagtttctgctacaag
tgcattcgccagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgac
aatgtggatcagctctatccaaactttcttgtgaatgaacttattctcaaacaaaaacag
agatcagatgaaaaacgcctgaagatggaccatccgaatgggtcaagatggcaagtgttc
caagatgtcctgggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctg
ggactccttgtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcag
atcctaatggaattcctcaaagaagcaagaagaaataaaagagagcaactggaacagttg
cagaaggagctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactg
tactcgccagtgagtgacatggatcgtaacttggacagcactgtacctaatttcgaggct
ccctcacctgcacccagtagtcttatagattctacagagtatgtgagtcaacctccaggt
tttggtggaacttcacaggggaagagacaaacatggtacaacagcactctggcttctcgg
agaaagaggctcacagcacactttgaagatctggagcaatgctacttctctgaccggatg
acgcggataacagatgacaccaggaacttaaatcaactggatgatttcatggagtgtctc
tcaaagttcacacgcttcaactctgtgcggccgttggcgaccctgtcttatgctagtgat
ctctacaacggctccagtattgtctctagtattgaatttgaccgtgacggcgattacttt
gccatcgccggcgtcaccaagaaaatcaaggtgtttgaatatggtactgtgatccaggat
gctgtggacattcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatc
agctggagcagctaccacaagaatctgttggctagcagtgactatgagggaacagtcatc
ctgtgggatggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaaggtgt
tggagtgtcgatttcaacctcatggatcccaagcttctagcctctggttctgatgatgca
aaagtgaagttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagca
aatgtgtgctgtgtaaagttcagtccaacgtcgaggtatcatcttgcttttggttgtgca
gaccactgtgtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaa
ggccacaggaaagctgtgtcctacgctaagtttgtcaacggagaggaaattgtatctgcc
tcaacagacagccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattc
aagggccacatcaatgagaagaactttgttggccttgcctccaatggagactatgttgcg
tgtggaagtgagaacaactctctgtatctatactacaaaggcctgtccaagacactgctg
acatttaagtttgacactgtgaagagtgtgctggataaagacaagaaggaagatgacacc
aatgagtttgtcagcgctgtatgctggagagctatgcctgacggggactcaaatgtgttg
attgctgcaaacagtcaaggaacaatcaaggtacttgaacttgtttga
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