Salvelinus namaycush (lake trout): 120055969
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Entry
120055969 CDS
T07522
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120055969
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120055969
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120055969
03029 Mitochondrial biogenesis [BR:
snh03029
]
120055969
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120055969
Membrane trafficking [BR:
snh04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120055969
Mitochondrial biogenesis [BR:
snh03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120055969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
120055969
NCBI-ProteinID:
XP_038859990
UniProt:
A0A8U1BN57
LinkDB
All DBs
Position
Sna11:complement(28221170..28240425)
Genome browser
AA seq
1642 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMCEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLGKSCSTPAKDSDETEDEKSTDSV
LCPTPTETQRSSTKLPMSVCAPGAGGSPDTAQAQESSEMTDSSGLRAALQEADSPERANP
PSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELME
RVRVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWACALVKDGKRLYETEKYKRETFGKL
FRKSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLP
TLCDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSAQRSTAAVTPLT
TRSNSTPGTTFTSSMTPSSLSLPGPLCQPLPGHGPTMLEDLSPDSIDAQTFDFETIGHPN
MDPVLQQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISDPTSPGMMVESLYSSVINA
IDSKRMHDTTTLERENSKMAALKLSMEKYRTAAEESQTNLRSVKDDLYRHRDLLLKEQRD
FGFALKTMTIEVRNMVDTIRKREEEEHQAELLSLQQDHENQLQALMEENQVNKNIVKDVQ
RAMLELEGLLEHKKKELTQLEVEREDWAEAENGHTQTARVLEQKISDQVQEVQTLAASRD
SLASQLETLHIEIERGQQKIRQELEGAKQSHLQELEERMRHQHQAQLDTLARENQEALEH
LATENRAKLSEVTDLHTATLTERDCQLRDLEARVIELADLRCKLEVELALKESETEEVRL
LYEEAKQGQQEANVGKATVEAETQSLSEQLAQVNRQLQAKNEEYETDLAELRRLMEKDQC
ISELVDRHEEERNQLLRERTALQQQTLDTERSQVEQLQNLQRDLDLQTVALCEDKEKQRG
SSEEQEQHLRTVIYDLQVENDLLAKRIEQDTQTAQERLEKEMALKAAVPDVFKDLKQQKV
EMEKRLLDKIRQLECDLQERQSSEREAGLSEVQTEGRGSDAGAPLSLDSALQEHLQQETA
SLHTQLELLERRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQ
QEKDKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNLLALEPTGAGPGPG
LCPGPGTEVEVGAGACYSEPFLDTDRLASVAAIREDDKVDSAVEASMVTVHDNILMMSEE
KQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERH
DNYVLFTVGPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQN
RFKVPLGTKFYRVKAVSWNKKV
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctgacatttgacacagagctt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaagtacaagattgcaacc
cagcatcaagtcctggttgtcaatggaggggagtgtatggttgcagagaggcgtgtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatccccaaaaccacattctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtgtgaagttgccaagaaactttgctctttctgcgaacgcctggtt
cacgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacagcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagagaatgtctagggaagtcc
tgctccactccagccaaggactccgatgagaccgaggacgagaagtccactgactctgtg
ctctgccccacccccaccgaaacacaaaggagctccaccaagttacctatgtcagtttgt
gctccgggggcggggggctcacccgacaccgcccaagcccaggaaagcagtgagatgact
gacagtagtgggctgagggcagcccttcaggaggcagactctccagagagggccaacccc
ccgtccttcaacgtcacactgctggactggatcaacgttcaagaccggcccaatgacgtg
gaatcagttgtgaggaaatgctttgactccatcaataggctcgacccacggatcattcaa
ccattcttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagcc
atcaaagggcttgaggacaggttatacgctctagaccaaatgatcgcaagctgtaacaag
ttggtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgctgag
aacctgaaggatacgtccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatg
atcatgctgaccaaccaccggaagctgctggacataaaacagaagtgcaccactgccaaa
caggaactggcgaacaacctacaggttcgactcaaatggtgctgctatgtgatgctgcac
gcggatcaggatggagagaagctgcaggccttgctgaggctgctgacagagctgatggag
agggtccgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggccgtggtg
gaggtggtccgcaggaagatcttcataggccactacagagagtgggcctgtgctctcgtg
aaggatggaaaacgtctctatgagactgagaagtataaaagggaaacgtttggcaagttg
ttcaggaaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccact
tcattttgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggt
gacctgcagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttcca
acactgtgtgactttgagcctttgcaccagcacgtggagatgcttcaacagttggtgcta
gctactcaagctgccagtgtggacgagatgtctcgaactatcactgacttgctgagcgaa
caaagggtgtcgtgcagccagagtgctcagagatccacggcagcggtgaccccgttaacc
acgcggtccaacagcaccccggggaccacctttacctcgtccatgaccccatcctctctc
agtctcccgggcccactctgccagcccctccctggccacggccccaccatgctggaggac
ctgtctccagacagcatcgacgctcaaacctttgactttgagaccattggccaccccaac
atggaccctgtcctgcagcaggccggttccctggacctggactccctggctgagagcccc
gagtcagacttcatgtcggcggtcaacgagtttgtgattgaaaactcgcccacccccatc
agcgaccccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgct
atcgacagcaagcgcatgcatgacaccaccactttagagagggagaactccaagatggcc
gcgctaaagctgagcatggagaagtaccgcactgccgccgaggagtcccagaccaacctg
cggagcgtcaaggatgacctgtaccgccacagagacctgctgctgaaggagcagcgagac
tttggtttcgccctgaagaccatgaccattgaggtgcgcaacatggtggacaccatccga
aagagagaggaggaggagcaccaggccgagctcctctccctgcagcaggaccacgagaat
cagcttcaggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacgtgcag
cgggccatgctggaactggaggggctgctggagcacaagaagaaggagctcacccagttg
gaggtcgagagagaggattgggccgaggcagagaacggacacactcaaacagccagggtc
ctggagcagaagatcagcgatcaggtccaagaggtgcagaccctggctgcctccagagac
tccctggccagccagctggagacgctgcacattgagatcgagcgcggccagcagaagatc
cgccaggagctggagggggccaagcagtcccacctgcaggagctggaggagaggatgagg
caccagcaccaggcccagctagataccctggcccgggagaaccaggaggccctggagcat
ctggccacagagaacagggccaagctgagcgaggtcactgacctgcacaccgccaccctg
acagagagggactgccagctgagggacctggaggcccgggtcatcgagctggctgacctg
cgctgcaagctggaggtggagctggccctgaaggagtctgagacggaggaggtgaggctg
ctgtacgaggaggccaagcaggggcagcaggaggccaatgtggggaaggccactgtggag
gctgagacccagtccctcagcgaacagctagcccaggttaacaggcagctgcaggccaag
aacgaggagtacgagacggacctggctgagctgaggaggctgatggagaaggaccagtgt
atctctgagttggtggacaggcacgaggaggagaggaaccagctcctcagagagcggact
gccctgcagcagcagaccctggacaccgagaggagccaagttgagcagctgcagaacctc
cagcgagacctcgacctgcagacagtggcactgtgcgaagataaggagaagcagcggggg
agttctgaggagcaggaacaacacttaaggactgttatctacgatttgcaggtggagaac
gacctgctcgccaaaagaatagagcaagacacacaaacagcccaggaacgtttggagaaa
gagatggccttgaaggctgctgtaccagatgtctttaaagacttaaagcaacagaaggtg
gaaatggagaaaagactgttagacaaaattagacaacttgaatgtgaccttcaggaaaga
caatcctctgaaagagaggcagggttgtcggaggtacagacagagggtcgggggtctgat
gcaggggctcctctctccctggactctgcattgcaggagcatctgcagcaggagactgcc
tcgctgcacacccagctggagctcctggagaggaggaagaacgaggagatgcagaacctc
aagacctccctcattgcagaacaacagactaacttcaacactgtgctgacgagagaaaag
ctgaaaaaggaacagatcatcaatgatctgacagagaagctgcggaaggttacccagcaa
caggagaaggacaaaggtctaatagagacactgtctgaagaccgggccatcgtcatgcag
gagaagaagcagttggaggaggacctgaaccggctgcgcagcactgccctggtgtcctcg
gcctactacagccctaacctcttagctctggagcccactggagccgggcctggacctggg
ctttgtcctggtcctgggactgaagttgaggttggggctggagcctgctactcggagccc
ttccttgacacagacagactggcctctgtggccgccatcagagaggacgacaaggtggac
tcagctgtggaggccagtatggtgaccgtacacgataacatcctgatgatgtccgaggag
aaacagcggatactgttacttgagaggactttacatatgaaggaagaggaaaacaagcgc
ctcagtcaaagactgatgtctcaaagcatgtcctcggtgtcgtcacggcattcagagaaa
atcgccatcagagatttccaggttggtgacttggttctgatcatcctagatgaaaggcat
gacaactatgtactgttcaccgtgggtcccaccctgtacttcctccactccgagtccctc
actgcactggacctcaaaccagatcctatgtttacttcagcatcaggagcctcaagacgc
ccgtgggttcttggaaaagtgatggagaaggaatattgccaggcgaaaaaggctcaaaac
cggttcaaagttcctttgggcaccaagttctacagggtgaaagctgtttcatggaacaag
aaagtataa
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integrated database retrieval system
