Salvelinus namaycush (lake trout): 120055994
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Entry
120055994 CDS
T07522
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
snh04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
120055994
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120055994
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120055994
Transporters [BR:
snh02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120055994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
120055994
NCBI-ProteinID:
XP_038860035
UniProt:
A0A8U1BN83
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All DBs
Position
Sna11:complement(30257569..30287696)
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AA seq
1276 aa
AA seq
DB search
MGLLSEINYLFFLFIILTEGHYKWVQAQHCVWYGECGESDKVPGKKYNCNYTGPPIPLPV
EGHELLTELCPGYDYGNQSLCCDVQQLQTLKGSLQLPLQFLSRCPACFFNLMNLFCELTC
SPLQSLFMNGTQFTNDTAANKTNVVEVQYYIGQTFANAMYNACQDVQAPSSNVKALSLLC
GKDASDCNATNWIEYMFDINNGQSPFTIIPIFSDVSVSGMTPMNNKTYDCTEGLEDGSGP
CSCQDCSPACGPQPVPPPLPPPWTILGISAMVIIMWISYMAFLLVFMGTVIGTWCYRKRR
IESEYGPILDSNNPHSLNNDSIDQVDVSCGETLGEHFENALRYLFTRWGSFCVRQPLMVI
LGSLIIVAACSGGLVYMKITTDPVELWSSPSSQARQEKDYFDSHFGPFFRAEQLIITTTL
QSESTYSPYPAGAAMPFGAPLDKDVLHQVLDLQTDIENIVASYGDQKVTLKDICLAPLAP
YNDNCTILSVLNYFQNSHKQLDHSIGDEFYVYADYHTHFLYCVSAPASLNDTSLLHDPCL
GTYGGPIFPWLVLGGYDATNYNNATALVITFPVNNYHNDTVKLGKALAWEKEFISFLKNY
TNPNLTISFNSERSIEDEINRESESDLSTVVVSYAIMFVYISLALGHIHSFRRVLVDSKI
SLGIAGIVIVLSSVACSLGIFSYAGIPLTLIVIEVIPFLVLAVGVDNIFIIVQTYQRDER
MPHEELHQQIGRILGDVAPSMFLSSFSETVAFFLGALSTMPAVRTFSLFAGLAVFIDFLL
QISCFVSLLGLDAKRQEENRLDIMCCVKLPEGKDEKTDGFLFRFFKNIYAPFILKEWVRP
IVVAVFVGLLSFSIAVTNKVEIGLDQKLSMPDDSYVLDYFKNLSTYLHTGPPVYFVVEDG
HDYLSLEGQNSVCGGVGCNNNSLIQQVYTASLISNYTTIGFNPSSWLDDYFDWVKPQSAC
CRYYNSSGAFCNASVVDTSCVHCRPMTPSGKLRPTEQDFMKFLPMFLSDNPNVKCGKGGH
AAYSSAVVLKGNDTSVGATYFMTYHTILKDSPDFIDAMKMARMLADNITTAMGHKVFPYS
VFYVFYEQYLTIAYDTVFQLGVSLAAIFVVTTVLLGFELWSGVLVSITIAMILVNMFGVM
WLWDISLNAVSLVNLVMSCGISVEFCSHIVRAFSISVKSTRVERAEEALAHMGSSVFSGI
TLTKFGGILILALSKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYAGPSVNKAKVFA
ANKRYAGTERERLLNF
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggggctcttatcagaaataaactatttatttttcctcttcataattttgacagaggga
cattataaatgggttcaagcccagcactgtgtgtggtacggtgagtgtggtgagtccgac
aaggtcccggggaagaagtacaactgcaactatacaggacctcccatcccacttccagta
gagggccatgagctgctcacggagctgtgtccaggttatgactatgggaaccagagtctg
tgctgtgatgtccagcagctccagactctgaaagggagccttcagttgcccctacagttc
ctctctcgatgcccagcctgtttcttcaacctgatgaacctgttctgtgagctaacctgc
agccccctccagagtctctttatgaatggaacccagttcactaatgacacagctgccaac
aagaccaatgtggtggaagtccagtactacattggacagacatttgccaatgccatgtac
aatgcttgtcaggatgtccaggctccctccagtaatgtgaaggccttgtcactgctctgt
gggaaagatgccagtgactgcaacgccaccaactggattgagtacatgttcgacatcaac
aacggacagagtcccttcaccatcatccctatattctcagacgtgtcagtatccggtatg
acccccatgaacaacaagacatacgactgtacggagggtctggaggatggctctggtccc
tgctcctgccaggactgtagcccggcctgtggtccccagcctgtcccccctcccctgccc
ccaccatggaccatcctgggcatcagcgctatggtcatcatcatgtggatctcctacatg
gccttcctccttgtcttcatgggaaccgtgatcggcacctggtgctacagaaaaaggaga
attgagtctgagtatggcccaatattggacagcaataaccctcactctctgaacaatgac
agcattgatcaagtggatgtgtcgtgtggcgagacattgggcgagcactttgagaacgcc
ctgcgttacctctttacccgctggggctcattttgcgtacggcagcccctcatggtcatc
ctgggcagcctgatcatagtggctgcctgctcagggggcctggtctacatgaagatcacc
acggaccctgtggagctgtggtcctcgcccagcagccaggctaggcaggagaaggactac
tttgacagccactttggacccttcttcagggcagagcagctcatcatcacaaccacattg
cagtcagaatccacctactccccgtaccccgcgggggctgccatgcccttcggagccccc
ctggacaaggacgtcctccaccaggtgttggatctccagacggacatagagaacatagtg
gcctcatacggggaccagaaggtgaccctaaaggatatctgcttggccccactggcccca
tacaacgacaactgtaccatcctcagtgttctcaactacttccagaacagtcacaaacag
ctggaccatagcataggagatgagttctatgtctatgcagactaccacacacacttcctc
tactgtgtcagtgccccagcgtccctcaacgacaccagtctgctccacgatccctgcctg
ggcacctacggaggccccatcttcccctggctggtcctgggaggctatgatgcaaccaac
tacaacaacgccacagctctagtgatcacgtttcctgtcaacaactaccataacgacact
gtcaagctggggaaagctctggcctgggagaaagaattcatcagcttcctgaagaactat
acaaaccccaacctgaccatctccttcaactctgagaggagcattgaggatgagatcaac
cgtgagagcgaaagtgacctcagcactgtcgtggtcagttatgctataatgttcgtctac
atctccctggcgttaggacatatccacagcttcaggagagtattggtggactctaagatc
tccctgggcatagcgggcattgtgatcgtgctgagctcagtggcctgttctctgggcatc
ttcagctacgctggcatccctctcacacttatcgtcatcgaggtcatccccttcctggtg
ttagccgtgggcgtcgacaacatcttcatcattgtacagacataccagagggatgagcgg
atgcctcatgaagagctgcaccagcagataggccgtatcctaggagacgtggctccaagc
atgttcctctcctccttctctgagaccgtggctttcttcctgggggccctgtccactatg
ccagcggtgcggaccttctccctgtttgctgggttagctgtattcattgactttctgcta
cagatcagctgcttcgtcagcctgctgggcctggacgccaagaggcaggaggagaatcgt
ctggacattatgtgctgtgtgaagctgccagagggcaaggacgagaagactgatggcttc
ctcttccgcttcttcaagaatatctacgccccctttatcctcaaggagtgggtcagaccc
atagtggtggctgtgtttgtggggctgctgtccttcagtattgctgtcaccaataaggta
gagattggactggaccagaagctctccatgcctgatgactcgtacgtgctggactacttt
aagaacctgagtacgtacctccacacgggtcctccggtctacttcgtggtggaggacggc
catgactacctgagtctggagggccagaactctgtgtgtggaggggtgggctgcaacaat
aactctctgatccaacaggtctacacagcatctctcattagcaactacaccactatagga
ttcaacccgtcgtcgtggctggatgattactttgactgggtcaagcctcagtccgcctgt
tgtagatattacaactcttctggggccttctgcaatgcctcagtggtggacacgtcgtgt
gtgcattgccgccccatgacccccagtgggaagctgaggcctacggaacaggacttcatg
aagttcctacccatgttcctgtcagacaaccccaatgtcaagtgtgggaaaggtggtcat
gcggcctacagttcagcggtggttctaaaggggaacgacacgtctgtgggggccacctac
ttcatgacctaccacaccatcctcaaggactcacctgactttatagacgccatgaagatg
gcccgcatgctggctgacaacatcacaaccgccatgggacacaaagtcttcccctacagt
gtgttctacgtgttctatgagcagtacctgaccatagcctacgacacggtcttccagctg
ggtgtgtcgctggcggccatctttgtggttaccacggtgctgctgggctttgagctgtgg
tcaggagtgctggtcagcatcaccatcgccatgatcctggttaacatgttcggggtcatg
tggctctgggacatcagcctcaacgctgtgtccctcgtcaaccttgtcatgagctgtggt
atctctgtggagttctgcagtcacatagtgagggccttctccatcagtgtgaagagtacc
agggtggagagggctgaggaggctctggcccacatgggcagctcagtgttcagtggcatc
actctgactaagtttggaggcatcctgatcctggctctatccaagtcccagatcttccag
atcttctacttccgcatgtacctggctatggtgctgctgggggccacgcacggactcatc
ttcctccctgtgctgctcagctacgcaggtccttcggtgaacaaggccaaggtgtttgca
gccaacaaacgctacgccggcacagaaagggaacgcctcctcaacttctag
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