Salvelinus namaycush (lake trout): 120056089
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Entry
120056089 CDS
T07522
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120056089
09122 Translation
03013 Nucleocytoplasmic transport
120056089
03015 mRNA surveillance pathway
120056089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120056089
03041 Spliceosome [BR:
snh03041
]
120056089
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120056089
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120056089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
120056089
NCBI-ProteinID:
XP_038860177
UniProt:
A0A8U1BW20
LinkDB
All DBs
Position
11:complement(34267086..34285358)
Genome browser
AA seq
2101 aa
AA seq
DB search
MADLEDVKLDGRPLQSLRVADLKAALEERGLPKSGQKNTLVKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAVEDDDTDKEDHTKDNNSSP
CAAPDQDVAPVLVDQHKLFGLSEGKGLAGPASEGEGHMSRDGHVSAPPAPTSAAVASLAV
RVGEQRPERVPTSSQVPADSDDDGADEDWDSGARRRNLGEPPRGQLARARSGGSRQHPQH
IPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPARQRTSSTSSSGSSSSGSC
SSSPDPQSNTERKPGPLTLLARKMASEGAFSGVGWHGRGDAERQDKNAATATMSSGRGPQ
EGTVSAITHTTNAAASLPFPRLVPVTNQGVLGGHLPHSEVPVSVLRPTIMEERDAAWQQA
NKEKELQAEREREKSPEQERLGAMEQERLERQRIFEQQRAVEQERERALERERKEREKAL
ARERKEREMALEREKALEQERKERALARERAQALEREEEEREKALAKEREEREKAMQLEK
QRAMERERALEQEREKEKALEREREEKAALESEREEKAALERERMVKVLELERQKALERE
MREKEREEKVRALEQERIEREKALEKEITMEKEREERERALEQEKVLQREKEKALEQEKA
LQREKEEKERALEQENVLQREKEERERALEQEKALQREKEEKERALEQEKALQREKEEKE
RALEQEKALQREKEEKERALEQEKALQREKEEKERALEQEKALQREKEEKERALEQEKAL
QREKERALEQGKALQREKEERGRALEQEKALQREKEERESALEQEKALQREKEERALEQE
KALHRERVERERALEQKKASQREREERERALEQEKALQREKEEKERALEQENVLQREKEE
RERALEQEKALQREKEEKERALEQEKALQREKEEKERALEQEKALQREKEEKERALEQEK
ALQREKEEKERALEQEKALQREKEEKERALEQEKALQREKERALEQGKALQREKEERGRA
LEQEKALQREKEERESALEQEKALQREKEERALEQEKALHRERVERERALEQKKASQRER
EERERALEQEKALQREKEEKERALEQEKALQREKEERERALEQEKALQREKEERERALEQ
EKALQREKERALEQEKVLQREKEERERALEQEKALHREREERERALEQKKASQREKEKRE
SHLPPWKRSREFGLTPLPTPPLSTGAGKMAATEEGGEPKVPSLPQKALRDNQPAESGTPL
SQSLAMSLSPQSSFKKFRFLRDPIVLSQSSASGVIKRPRTFSESHHPQSLALQSPSKFGE
PEQEGTQQGSQPSAGQAAPKKPARQGVLVSGADTSGTTGPERETPVISTLGKSPEEEKGK
SLVSEEHVQAHREETDKQVVGETAREAKAPSGPAGAVLPPSPQPVEGKVEKGRERSQKKE
EKLGRRSSSSNDSSDSGSSSSGSSGSSSSQGKTHTTPSGRRPEKPQTNTISQDTETVSQP
EDPTEAPKAPQHKKRVSGEEKEDMNIVGARHRKKPFLGMHAGEDNGQKDSEGEQVKTDTT
REVNEAAMAEPKKAPESSEECETPKAFTARRISLSSSKASPGAVSAEGETESGAGRKRRW
GSSTAVTAKKSSMSITTDSLKSLIPDIRLCPGQEMVVDLHPEEDHLSGVEEGGRERGEQD
LKIRRTVTQVVPSVTQENGQKESKRSEHEEEDREDGGEVKGDREEKMDGSFQRDSLETQC
PSPPSHDMEMKTVTPSDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKVSNIVHVSN
LVRPFTLGQLKELLGRTGTVLEDGFWIDKIKSHCYVTYSSAEESIATRAALHGVKWPQSN
PKFLSLDFIQQEELDFHRGLPPPERAGEGERGAAAVPGRGAALPPLLPEREQWAEREREM
EHRERTRAEREWDRDKVRDFGPGKPGEEAVPRRSCSRERKRKERKMDKKEKAADELPVKL
LDELFNKTKAAPCIYWLPLTEEQFAQKETARQERMKRRKEQQEEVEKKREEERKERMKAA
SVASGERGEGERYREREGDWGRDGESGKHREDCYRRPGGSSAGGARRSRSRSDPPPRDRR
R
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttaaactggacgggaggccgctacaatctctccgcgtggcg
gatttgaaagctgctttggaggagcgcggacttcctaaaagcggacagaaaaatactctc
gttaagagactcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaacagcttcataaag
cagtatttggcgaaacagcaggagctcttgaggcagcgtctggagagagaggcccgtgaa
gcagttgaagatgatgatacagacaaagaggaccacacaaaggacaataacagctctccc
tgtgctgccccagaccaggatgtcgcacccgtgttggttgaccagcacaagctttttggc
ctctccgagggaaagggactagcaggcccagcaagcgagggagaggggcacatgtccaga
gacggccatgtgtctgctccacctgcccctacctctgctgccgttgcctctctggctgtg
cgtgttggtgagcagagaccggagagagtcccaacctctagtcaagtcccagcagatagc
gatgatgacggcgctgatgaggactgggatagcggtgccaggaggaggaatctaggggag
ccaccaagaggccagctagcaagagcgaggtctggaggatcccgccaacacccacagcac
attccccccctattgtctccgcagcttcgacagcctacccctcctccctcccctccccca
gagttatcattcccactacctgatacccctaaacaaagcccccctagtccaggtgagccc
ccagctaggcagcgtacttccagtacctccagctctggctcctctagcagtggcagttgt
agtagcagcccagatccacaaagcaacacagagcgcaagcctggcccactgaccctgctg
gcacgcaaaatggcatcagagggggctttctctggagttgggtggcatggacgtggggat
gcagagaggcaggacaaaaatgctgcaactgcaacaatgtcttctggtagaggtcctcaa
gagggcacagtgtctgccatcacccacacaaccaatgctgcagccagtttgcccttcccc
agactggttccagtaacaaaccagggagttcttggaggccatctcccccacagtgaagtt
cctgtgagtgtgcttaggcccactattatggaagagagagatgctgcatggcagcaagca
aacaaggaaaaggagctgcaggcagagagggaaagagaaaaatcccctgagcaagagcga
cttggtgccatggagcaggaaagactggagaggcagagaatatttgagcaacagcgtgct
gtggagcaagagagggaaagagctttggagcgagagaggaaggagagagagaaagctttg
gcgcgagagaggaaggagagggagatggctttggagcgagagaaagctttggagcaagaa
aggaaggagcgggctttggcgcgagagagagcacaagctcttgaacgagaagaggaggaa
agagagaaagctttggcaaaagagagggaagagcgagagaaagctatgcaattagaaaag
cagagagccatggaacgagagcgagctttggagcaggagagagagaaggagaaagctttg
gagcgcgagagggaggagaaggcggctttggagagcgagcgggaggagaaggcggctttg
gagagggagcgtatggtgaaggttttggagttagagcggcagaaagctttggaacgggag
atgagggagaaagagagggaggagaaggtgagggctttggagcaagaaagaatcgaaagg
gagaaagcccttgagaaagaaataaccatggagaaagaaagagaggagagggagagagcc
ttagaacaggagaaggtcctacagagagaaaaagagaaggctttggaacaggagaaggcc
ttgcagagagagaaagaggagaaggagagagctttggaacaggagaatgtcttgcagaga
gagaaagaggagagggagagagctttggaacaggagaaggccttgcagagagagaaagag
gagaaggagagagctttggaacaggagaaggccttgcagagagagaaagaggagaaggag
agagctttggaacaggagaaggccttgcagagagagaaagaggagaaggagagagctttg
gaacaggagaaggccttgcagagagagaaagaggagaaggagagagctttggaacaggag
aaggccttgcagagagagaaagaggagaaggagagagctttggaacaggagaaggccttg
cagagagagaaagagagagctttggaacaggggaaggccttgcagagagagaaagaggag
agggggagagctttggaacaggagaaggccttgcagagagagaaagaggagagggagagc
gctttggaacaggagaaggccttgcagagagagaaagaggagagagctttggaacaggag
aaggccttgcacagagagagagtggagagggagagagctttggaacagaagaaggcctcg
cagagagagagagaggagagggagagagctttggaacaggagaaggccttgcagagagag
aaagaggagaaggagagagctttggaacaggagaatgtcttgcagagagagaaagaggag
agggagagagctttggaacaggagaaggccttgcagagagagaaagaggagaaggagaga
gctttggaacaggagaaggccttgcagagagagaaagaggagaaggagagagctttggaa
caggagaaggccttgcagagagagaaagaggagaaggagagagctttggaacaggagaag
gccttgcagagagagaaagaggagaaggagagagctttggaacaggagaaggccttgcag
agagagaaagaggagaaggagagagctttggaacaggagaaggccttgcagagagagaaa
gagagagctttggaacaggggaaggccttgcagagagagaaagaggagagggggagagct
ttggaacaggagaaggccttgcagagagagaaagaggagagggagagcgctttggaacag
gagaaggccttgcagagagagaaagaggagagagctttggaacaggagaaggccttgcac
agagagagagtggagagggagagagctttggaacagaagaaggcctcgcagagagagaga
gaggagagggagagagctttggaacaggagaaggccttgcagagagagaaagaggagaag
gagagagctttggaacaggagaaggccttgcagagagagaaagaggagagggagagagct
ttggaacaggagaaggccttgcagagagagaaagaggagagggagagagctttggaacaa
gagaaggccttgcagagagagaaggagagagctttggaacaggagaaggtcttgcagaga
gagaaagaggagagggagagagctttggaacaggagaaggccttgcacagagagagagag
gagagggagagagctttggaacagaagaaggcctcgcagagagagaaagagaagagggag
agtcatcttcctccatggaagcgtagtcgtgagtttggtcttacccccctgcctactcct
cccctctccacaggagcaggtaagatggcggcaacagaggagggtggggagcccaaagtg
ccatccctaccccaaaaagcattaagagacaaccagccagctgaatctggtacgcccctg
tcacaatctctagcaatgtctctgtcaccccagtcctccttcaagaagttccgtttcttg
agagaccccatagttctatcccaatcttctgcatccggggtcatcaagaggccccgtaca
ttctctgaaagccaccatcctcagtccttagctctccagtcccccagcaaatttggggaa
ccagagcaggaaggtactcagcaggggtcccagccttctgctggacaagcagcaccaaag
aagcctgcaagacagggggtccttgtttctggagcagacacgtcggggacgacagggcca
gagagggagaccccagtgatttccacactgggcaagagtcctgaagaagaaaagggtaag
agcctggtgtcagaggagcatgtccaagcacatagagaggagacagacaaacaggtggtg
ggagagacggccagagaagcaaaagccccctcaggtccagcgggagctgtgctacctccc
tcaccccaaccagtggaaggcaaggtagaaaaaggaagggagaggagtcaaaagaaagaa
gaaaagctgggaagacggtcttcctcgtcgaatgactcctcagattctgggtcgtcgtcc
tcaggttcgtctggttcatcatcatcccagggcaaaacacacaccactcccagtggtaga
aggcctgagaaacctcagacaaacaccatatcccaggatacggaaacggttagtcaacct
gaggatccaactgaggccccaaaagccccacagcacaaaaagagagtatctggggaggag
aaagaggacatgaacattgttggagccagacacaggaagaaaccattccttggaatgcat
gctggagaagacaatgggcagaaggacagcgagggagagcaggtaaagacagacactaca
agggaggtgaatgaggctgccatggctgagcctaagaaggctcctgagagcagtgaggag
tgtgagacaccaaaggcattcacagcccgtaggatctcccttagcagcagcaaggcctct
ccaggtgctgtcagtgcagagggcgaaacagagtctggggccgggaggaagaggcgatgg
ggatccagcactgcagtcacagccaagaaatcatccatgagcattaccacagactctctg
aagtctctgatcccagacatcagactgtgtccaggccaggagatggtggtggatttgcac
ccagaggaggatcacctctctggggtggaggagggcggcagggagcggggtgagcaggac
ctcaagatcagacgcacagtcacacaggtggtcccgtcagtgacccaggagaatggacag
aaggagtccaagaggagtgaacatgaggaggaagaccgagaggatggaggggaggttaaa
ggagacagagaggagaagatggatggctcattccagagagactcattggagacacaatgc
ccctctccccccagccatgacatggagatgaaaacagtgacccccagtgacacattgatc
cgtcgctccatcagccagcagaagtctggcgtgtccatcaccatagatgaccctgtccgc
acggccaagcagccctctcctccacgaggcaaagtgtccaacatcgtccacgtgtccaac
ctggttcgtccgttcaccctgggccagctgaaggagctgcttggtaggaccggcaccgtg
ctcgaggacggtttctggatcgacaagatcaaatctcactgctacgtcacatactccagt
gcagaggagtcaattgccactcgtgcagccctgcatggggtgaaatggcctcagagcaac
cccaagttcctcagtttggacttcattcagcaggaggagctggatttccacagaggcctg
cctccccctgagagggctggggagggtgagcggggggctgcggcggtgcctggtcggggg
gcggccctgcctcctctcctgcccgaacgggaacagtgggcggagcgagaacgtgagatg
gagcacagggagaggacccgggctgagagggagtgggacagggacaaggtccgggacttt
ggtccaggaaaacctggagaggaagctgtccccagacgatcctgctccagagagaggaaa
cgcaaggagaggaagatggacaagaaagagaaagctgcagacgaacttcctgtcaaactg
ctggatgaactgttcaataaaaccaaagcagccccttgtatatactggctccccctcaca
gaagagcagtttgcacagaaggagacagctcgacaagagcggatgaagaggaggaaggag
cagcaagaggaggtggagaagaaaagggaggaagagcgcaaagaaaggatgaaagccgcg
agtgtcgcatctggagaaagaggcgagggggagcggtacagagagcgagagggagactgg
ggcagagatggagagagtggcaaacacagagaagactgctaccgcagacctgggggcagc
agtgcagggggggccagacgctcacgcagccgcagtgaccccccacctcgtgacagacga
cgctag
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integrated database retrieval system
