Salvelinus namaycush (lake trout): 120056168
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Entry
120056168 CDS
T07522
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03410
Base excision repair
snh03420
Nucleotide excision repair
snh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120056168 (lig1)
03410 Base excision repair
120056168 (lig1)
03420 Nucleotide excision repair
120056168 (lig1)
03430 Mismatch repair
120056168 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120056168 (lig1)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120056168 (lig1)
Enzymes [BR:
snh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120056168 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
120056168 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120056168 (lig1)
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120056168 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120056168 (lig1)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120056168 (lig1)
NER (nucleotide excision repair)
Other NER factors
120056168 (lig1)
MMR (mismatch excision repair)
Other MMR factors
120056168 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
ASFV_J13L
Motif
Other DBs
NCBI-GeneID:
120056168
NCBI-ProteinID:
XP_038860306
UniProt:
A0A8U1BTC4
LinkDB
All DBs
Position
11:complement(39709602..39735464)
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AA seq
1178 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKESDGPVKDKPVKDKPVKDKPVKDKPVKDKPVKDKPEPVKR
PLKVQNGVHEEPDSPVKKFTKRSRQILDSDDDDDEAPAGIEQEQEDKAVQPKDEVFKAVT
TPLSPASPVTTSASPVTTSASPVTTSASPVTSSASPVTTSASPVTSSASPVTSSASPVTS
SATPVTSSATPVTPAASPTPGTPDTPTSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEE
EQGQQNKRAKVEETQDSTENEEEAMDVGGENSVEKPGVVQNNPEEKETDEEKTKDGEKEK
ALDVKETAAEEEKGKSEKAKERSPKGQKAKERSPKERSPKERSPKERSPKERSPKERSPK
ERSPKERSPKERSPKERSPKGQKAKERSPKGQKAVKDEKEKGSPKNERKEEKDMKEEKVS
ESPQAKKAPTISSFFAPRKAAVKMERPEKSEGDGKEKSEGDGKEKSEGDGKKKSEGDGKE
KSEGDGKEKSEGDGKEKSGECIKEEATVSRTPENVKDKKGEKTAQAQYDPSRPNYHPVDH
ACWSRGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVIVLSPEDLLCCVYLCLNQL
GPAYMGLELGVGDTVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRIMFQPAN
LIAGGVFNKLKDIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQS
VLSALSQAVCLTPPGQDFPPAVVDAGKGMSAEKQKAWIEEKSLVLKQTYCEMPNYDVIIP
VILKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHI
LENGEVRIFSRNQEDNTTKYPDIISRIPTVKNESVISCVLDSEAVAWDREKKQIQPFQVL
TTRKRKDVAAADIKVQVCVYAFDLLYLNGESLVKKPLSCRRALLKESFQEKEGEFVFARA
IDSDNTDVIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVD
LCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILP
KPRPYYRVDQSTEPDLWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRI
RDDKKPEEATSGGQIADLYRKQQVVQNQGDKADLEDYY
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
gaaagtgatggaccggtgaaagacaagccggtgaaagacaagccggtgaaagacaagccg
gtgaaagacaagccggtgaaagacaagccggtgaaagacaagccagaaccagtcaaaagg
cctctcaaagttcagaatggggtccatgaagagcctgattcgccagtaaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgatgatgatgaggctccagccggaata
gaacaggagcaagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttacc
acccccctgtcccccgcctctccagtgaccacatccgcctctccagtgaccacatccgcc
tctccagtgaccacatccgcctctccagtgacctcatccgcctctccagtgaccacatcc
gcctctccagtgacctcatccgcctctccagtgacctcatccgcctctccagtgacctca
tccgccactccagtgacctcatccgccactccagtgaccccagctgcctcccccacccct
ggaacccctgacacccccacttccatctcaccttccggaatacccaaacgccgcaccgca
aggaagcagttcccaaagagaaagctggacagccggagtggcagtgaaaaggaggaggaa
gaacaaggacagcagaataaaagagcaaaggttgaggagacacaggacagcaccgagaat
gaagaggaagcgatggacgtgggaggagagaacagtgtggagaagcctggggtggtgcag
aacaacccggaggagaaagagacggatgaagagaagaccaaagatggagagaaggagaaa
gcacttgatgtgaaagagaccgcggctgaggaggaaaaaggaaaaagtgaaaaggctaaa
gagagaagccctaagggtcaaaaggctaaagagagaagtcctaaagagagaagtcctaaa
gagagaagtcctaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaaa
gagagaagtcctaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaag
ggtcaaaaggctaaagagagaagccctaagggtcaaaaggcggtaaaggatgagaaagaa
aaaggaagtcctaaaaatgaaaggaaggaggagaaagacatgaaagaagagaaagtgtca
gaaagcccccaagccaagaaagcccccaccatcagcagtttctttgctcccaggaaggct
gctgtaaagatggagagaccagagaagagcgagggagacggaaaggagaagagcgaggga
gacggaaaggagaagagcgagggagacggaaagaagaagagcgagggagacggaaaggag
aagagcgagggagacggaaaggagaagagcgagggagacggaaaggagaagagcggggag
tgtataaaggaagaggcgacggtgtcccgtaccccggagaacgttaaagacaagaaagga
gagaagactgcccaggcccagtatgacccgtccagacccaactatcaccctgtagaccac
gcctgctggagccggggacagagggtcccgtatttggctgttgcacgcacctttgaaaag
attgaggaagattctggcagattgaggaacattgaaacattatctaatcttctacgctct
gttatcgtcctctctccagaggacctgctgtgctgcgtctacctgtgtctcaatcagctg
ggtcctgcttacatggggctggagctgggagtgggagacactgttctgatgaaggctgtc
gcccaagctactgggcgacagttggacaaaatcaaggcggaggctgcagagaagggggac
ttggggttggtggctgagagttcccgtaacaaccagagaattatgttccagccagccaat
ctgattgcggggggtgtgttcaacaaactgaaagacatcgggaacatgagtggaaattct
gccatgaataagaagatcgacatcatcaaaggtctctttgtagcctgtcgtttctctgaa
gccagatacattgtcaggtcgctggcagggaagctgaggattggcttggctgaacagagt
gtactctctgccctgagtcaggctgtgtgtctgactcctccaggacaagacttccctccg
gcggtggttgacgcggggaaaggaatgagtgcagaaaaacagaaagcttggatagaagag
aagagccttgtcctcaaacagacttactgtgagatgcccaactatgatgtcatcatccca
gtcattctgaaggaggggattgatgagctccccaaccactgcaaactcactccaggtgta
ccgttgaggcccatgctggctcaccccaccaaaggtgtaggggaggtgatgaagagattt
gatgaagccgccttcacctgcgagtacaagtatgatggagaacgagcacagatccatatc
ttggagaacggggaagtgcgtattttcagtcgcaaccaggaggataataccaccaaatat
cctgacatcatctcccgcattcctacggtaaagaatgagtctgtgatttcctgtgtgttg
gactctgaggcagtagcttgggacagagagaagaagcagatccaaccattccaggttctc
accacacggaagagaaaggatgtggctgcagctgatatcaaggtccaggtgtgtgtgtac
gccttcgacctcctgtatctcaatggagagtctctagtgaagaagcccttgtcatgtcgc
agggctctgttgaaggagagcttccaggagaaggagggagagtttgtgttcgcccgtgcc
atcgactcagacaacacagatgtcatcgctgagttcctggagcaatcggttcgagactcc
tgcgagggactcatggtgaagactctggagaaagatgccacgtatgaaatcgccaagcgc
tctcacaactggctcaagctgaagaaggattatctggatggtgtgggggacacggtggat
ctgtgtgtgatcggagcgtatctggggaagggcaagagaacagggacctacggaggcttt
ctgctcgcctgctacgatgaggacaatgaagagttccagtcagtctgcaagattgggaca
gggttcaaggatgaagatttggagcaacattataaattcttaaaggagcatattttgcca
aagccacgcccctattaccgtgtggaccaatcaactgagcccgacttgtggctcgatgca
gtgcaagtatgggaagtgaagtgtgccgacctatcgctgtcgccgatctacaaggctggc
atgggattgtgtgacccagagaagggcatctctcttcggtttccacgcttcctgaggatc
agagatgataagaagccagaggaggccacttcaggaggacagattgctgatttatacagg
aagcagcaggttgtgcagaatcagggcgacaaagctgaccttgaggactactactga
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integrated database retrieval system
