KEGG   Salvelinus namaycush (lake trout): 120056212
Entry
120056212         CDS       T07522                                 
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
  KO
K15542  polyadenylation factor subunit 2
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120056212 (wdr33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snh03019]
    120056212 (wdr33)
Messenger RNA biogenesis [BR:snh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     120056212 (wdr33)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 WD40_Gbeta Beta-prop_IFT140_1st EIF3I Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 Beta-prop_SCAP WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_WDR11_2nd Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 120056212
NCBI-ProteinID: XP_038860385
UniProt: A0A8U1EQI1
LinkDB
Position
11:complement(2210535..2251861)
AA seq 1123 aa
MATDTSSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGILSNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNSLAAIPGMGIPDQLKAAMEQEASDKETAAEEEMSIPGLDWGIEE
ILQKDQKKVPQKKVPYAKPIPAQFQQAWADNKVPLVPPGGEKKERMDEKKMDGKTNTNPM
MLEQMKMDRMNQMDGNMPPPGGPQGPMPPFPGQGGTMPPPPQGFPQSMPPQQMPHNMGPP
MGPGVNQAPFMRPGQMGPPPGSQHHQGPPQGMMGPPDLHGPQGMQRHPGPHRNMGPQGPH
GMPPGPRGMQGPPGNMQGPPPGGMMGPPRGQGPPPQGGMMPPQGNMMGPQGPMQGGVGMG
PPMQNPPRTHGNMPSMGGMHGMGNMQGPPPGGMHGPPPGNMQGPPGNMQGPSGNMQGPPG
NMQGPPGNMQGPPSYMQHQVGQNTGPMMHGMGQQGPNGKGDTRGPPNHHMGPPPGGQGQG
GPGGPDQGSGSYWGDSQQGRRSNDFNEGGQDFHGRGEESWRRGSSQEYQGGHRGGGGGGF
GGYVSPGEEFDQRQRDRLPPPRHGQDSDDTYRGVGQGRPGGRGFPDEFGGPEENFDTSNE
MAGGWDNGGRGRPPRGGGPPRGGGGGGGGRQGLLPTPDEFPPHYEGGRSQEAWEGGQDQG
HEAYREGQRSEHGPPHDSPSPASRERSSSLQGMDMASLPPRKRPWHDGPGTGDQDSPGAG
VEDRTTGRPPQREEGGYGPSTRGGRGGWRGAPRGAPRGGGRGR
NT seq 3372 nt   +upstreamnt  +downstreamnt
atggcgacggacaccagctccccgccacggttcttccacatgccgcggttccagcaccag
gcaccacggcagctcttctacaagcgccccgacttcgcccagcagcaggccatgcagcag
ctcaccttcgacggcaagcgcatgcgtaaggctgtcaaccgcaagaccatcgactacaac
ccctcggtcattagacacctggagaatcgtttgtggcagcgagaccacagagatttccgt
gctatccaaccagatgcaggatgctacaatgatctggttcctcctgtgggcatcttgagt
aaccccatgaatgcagttaccacaaagtttgtccgaacttccacgaacaaagtgaagtgc
cctgtctttgtcataaggtggactcctgaggggaggcgacttgtcacaggagcctccagt
ggagagttcaccttgtggaacggactcaccttcaactttgagaccatcttacaggcccat
gacagccccgtgcgggccatgacctggtctcacaacgacatgtggatgctgacggctgac
cacggcggctacgtcaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctcacctacggataataaatttgccacttgc
tctgatgacggaaccgtacgcatctgggactttctacgctgtcacgaggagagaattctc
agaggtcacggagctgacgtgaagtgcgtggactggcatcccactaaaggcctggtggtt
tctgggagcaaagatagccagcagccaataaaattctgggatcccaagaccggacagagt
ttggccacacttcacgcccataagaacacggtgatggaggtgaagtggaacctgaacggt
aactggctgctgacagcgtcacgcgaccacctgtgtaaactctttgacatccgcaacctc
aaggaggagctgcaggtgttccggggccacaagaaagaggccacagctgtagcgtggcac
cctgtccacgagggcctgttcgccagcggaggctcagacggatccctcctcttctggaac
gtaggtgtggagaaggaggtgggcggaatggagatggcccatgagggcatgatatggagc
ctggcatggcacccgctcgggcacatcctctgctcgggatccaacgaccacaccagtaaa
ttctggacgaggaatcggccaggggacaagatgagggacagatacaatctgaatttgtta
cctgggatgtcagaggatggagtggaatacgatgacatggagccaaacagcttagctgcc
attcctggcatggggatccccgatcagctcaaagctgccatggaacaagaggcaagcgat
aaagagactgcagccgaggaggagatgagcatcccaggtctggattgggggattgaggag
attttacagaaagaccagaagaaagtgccacagaagaaggtcccctacgccaaacccatc
cctgcccaattccaacaggcctgggcagataataaggtgcctctcgtgccaccgggagga
gagaagaaagaaaggatggatgagaagaaaatggatgggaagaccaacaccaacccgatg
atgctagagcaaatgaagatggaccgtatgaatcagatggatgggaacatgcctcccccg
ggaggtccacaaggacccatgccacctttccctggtcagggaggaaccatgcccccacct
cctcagggcttcccccagtccatgccccctcagcagatgccccacaacatggggcccccc
atgggccctggcgtcaatcaggctccgttcatgcgtccgggccagatgggcccccctcca
gggtcccagcaccaccaggggcctcctcagggcatgatgggtccccctgacctccatggg
ccccaaggcatgcagaggcaccccggcccccacagaaacatgggcccccaggggcctcac
ggcatgcctcccggacccagagggatgcagggcccccccggaaacatgcagggcccccca
ccaggaggaatgatggggccccctcgaggccaggggcctccaccacaggggggcatgatg
ccccctcaggggaatatgatgggcccacagggacccatgcagggcggggtggggatgggg
cctcccatgcagaaccctcccaggacacacggcaacatgccaagcatggggggcatgcat
gggatgggcaacatgcaggggccacccccaggtgggatgcacgggcccccaccgggtaac
atgcaaggaccccccgggaacatgcagggcccctctggaaacatgcaaggacccccaggc
aatatgcagggcccaccaggcaacatgcaggggcctccatcctacatgcagcaccaggtg
ggacaaaacactggccccatgatgcatgggatgggacagcaaggacccaatggcaaagga
gatacccgagggcctcctaaccaccacatgggtcctccacctgggggccaggggcagggc
ggccctgggggccctgaccagggctctggttcttactggggagactctcagcaggggcgc
cgatccaacgacttcaatgaaggtggccaggacttccacggacggggggaggagagctgg
aggagagggtccagccaggaataccagggaggccacagaggaggagggggaggagggttt
ggtggttatgtgagtccaggagaggagtttgaccagaggcagagagacagactgcctcca
ccaaggcatggccaggactcagacgacacgtacagaggggttggacagggtcgccctggg
gggagggggttccctgatgagtttggtgggccggaagagaactttgacacctcaaatgag
atggccggaggttgggacaacggtgggagggggagacccccccgaggagggggcccaccc
agaggaggaggaggtggtggaggtggacgccagggcttgctccccacccctgatgagttc
cccccacactatgagggaggcagaagtcaggaggcctgggagggcgggcaagatcaaggt
cacgaggcttacagagaaggccagcgctccgagcacggcccgccgcacgacagcccgtcc
cctgccagccgtgagcgctcctcctccctgcagggcatggacatggcctcgctgccccca
cgcaaacgcccgtggcacgacggcccgggcaccggagaccaagactccccgggagcaggg
gtagaggacaggacaacaggccgaccgccccagagagaggaaggcggctacggcccctcg
acccgcggcggcagagggggctggaggggggcgccccgcggggcccccaggggaggaggg
cgtggccggtag

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