Salvelinus namaycush (lake trout): 120056269
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Entry
120056269 CDS
T07522
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120056269
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120056269
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120056269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_C
SNRNP200_wHTH
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
120056269
NCBI-ProteinID:
XP_038860445
UniProt:
A0A8U1EQJ7
LinkDB
All DBs
Position
Sna11:9453805..9486506
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AA seq
1452 aa
AA seq
DB search
MLDSEDCTLSLDNLFFERPVVHKVLFKPSSGQVLNSSANSNRGLNQARPGVQQTFDHVSM
ATEPRLAKQSAAGPGSLTGLCPPTARGPPQKTQDKGTKRAHVLPMTPQPLHIQNVYGFVF
ILGTSGPGILRPISEIPAKFRSVFKEFPYFNYVQSNALDDVLYTGKNFVACAPTGSGKTV
LFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKKKFGPLGLSCKELTGDTEID
DFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDPMRGATLEVVVSR
MKAVHAYRAAENPQEDLSMRFVAVSATIPNTKDIADWLCDDRDPATCLEMDESHRPVKLR
KVVLGFPCSSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSATVLAKDAR
FIMSIEHKQRLVNYANSLLDSKLRDLVLFGVGFHHAGVDVSDRKRIEEAFNMGDLPVLFT
TSTLAMGVNLPAHLVVIKSTMHYIGGACEEYSEADMLQMIGRAGRPQFDTSATAVIMTKT
QTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNMALDWIRSSFLYIRALKNP
RHYGFSTDLDRCGIEAKLQELCLKNLHSLASIGLISMDEDVNIKATEAGRLMARYCVAFD
TMKQFSKVTGTETLPELIELMVKGREFTDVQLRVNEKRTLNTLNKDKNRITIRYPMEGKI
KNKEMKVNCLIQAQFGSIPIQEFGLAQDTGRIFRNGVRISRCLAEFLNQRSKTGFSALLN
SLILAKCFRAKLWEDSPYISKQLEKIGLSLSTAMVNAGLTSFNKIEQTNARELELIVNRH
PPFGNQIRDAVINLPKYEVSLEQLPRYNIATAEIAVTVNVKNHEQLLSKRTTHDHHYVTM
IIGDCDNNVVFLQKLTDLMLLKSGNWSKKIEVAKAFKGEEISVNLISSEYVGLDIQQKFS
AFYSGPKRYGGESLTPEQHDTMQIAQANAQRSQGATQRIQPTGQQTQATAQKRTSTSTEK
VPGKRQCNHFCKNKDQCGHDCCQNGVPVVLKRPMNQHSSFSSYLQDLKTRSDTLTETPVK
RLKMRMSGGTGATNIQQFSYTPAACRYVGNHHGASSIQHSVESAEDFATPQEMAYLENYD
HEYNDYLEDIYQTMGEEEPPPIQTPTESQSTSMWRKPSAYNGGSLSHSTPQSQGMGYSQS
HSTTQSQITGYPQSHSTHQTHSMGYPQSHFPLQNQSREETQSHNTPQSQTSGYSTPQSQS
RSYSPSPIVDLTDDSGFLSSSHTPSVTFDLGDEWDDFDDDNLVHASETSCTTVAKTQGMD
RDRLKGHSTPLPSTYVQPKPRFTVSSAPLRSTSPVVPQIAVTSLSVRPHNLQASAPWSHS
DNKATRTFIEPSVKAPSFPKQTDARMAPLGGQFDFFSKTTTPKNDNATGKRLQGEDNSKE
VEAFMGIFDGLF
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagactgcactttgtccctggataacctgttctttgagaggccagtt
gtccacaaagttttgttcaaaccttccagtggtcaggtgttgaacagcagcgcaaactca
aacagaggcctcaaccaggcaagacccggagtgcagcaaaccttcgaccatgtttctatg
gcgacagagcctcggctggcaaagcagtcggcagcaggccccggctccctcaccggtctg
tgcccgcctacagcccggggaccaccacagaagacacaggacaagggcaccaagagggct
catgttctccccatgacaccccaaccccttcacatacaaaatgtctatggatttgttttc
atattaggtacttctgggcctgggatactccgaccaatctctgaaatccctgctaaattt
agatcggtcttcaaagagttcccttacttcaactacgttcaatcaaatgccctagatgac
gttctatacacaggtaagaactttgtggcttgtgctcctacgggctctggtaagactgtg
ctttttgagttggccatcatccgcctactgatggagaccacagagccctggagaaacgtc
aaagctgtgtacatggcccccatcaaagctctatgcagccagcgctttgaggactggaag
aagaaattcgggcctctgggcctgagctgcaaggagctgaccggagacacagagatcgac
gacttctttgagattcaggacgcccatatcatcatgaccacacctgaaaaatgggacagc
atgacgaggaagtggagagataactgcctgctgcagttggtccggcttttccttattgac
gaggtgcacgtggtgaaggaccctatgcgtggagccacactagaggtggtggtgagcagg
atgaaggcggtccatgcctaccgtgcagcagagaaccctcaggaggacctctctatgaga
tttgtggccgtctctgccaccatccccaataccaaggatatagcagactggctgtgtgac
gacagagaccctgctacttgtctggagatggatgagagtcacagaccggtgaaactgagg
aaagtagtgctgggtttcccctgcagcagcaaccagactgagttcaagttcgacctgtca
ctcaactacaagatggccaacatcatccagacctactcggaccagaaaccaacacttgtt
ttttgttcaacaaggaaaggagtccagcagtcggccactgttctggccaaggatgccagg
ttcatcatgagtattgagcacaaacaaaggttggtgaattatgcaaactctctcctggac
tcaaaactcagagacttggtgttgtttggggttggtttccaccacgccggagttgacgtg
tcagacaggaagcggatcgaggaggccttcaacatgggagacctgcctgtgctgtttaca
actagtactctggcgatgggggtgaacctgccagcccacctggtggtaatcaagtccacc
atgcactacatcgggggcgcctgtgaggagtacagcgaggccgacatgctgcagatgatt
ggccgagcaggccggccacagtttgatacatcagcgaccgcagtgatcatgaccaagact
caaaccaaagacaagtacatgcagttcatgaatggagcggaaatcatcgaaagcagcttg
catacccacctggtggagcacctgaacgctgagattgtcctccacaccatctcagacgtc
aacatggccctggactggatccgctccagcttcctctacatccgagctctgaagaacccc
agacactatggcttttccactgacttggaccggtgtggaatcgaagccaaattgcaagag
ctctgtctgaagaacttgcattccctggcctccattggtctgatctccatggatgaggat
gttaacatcaaagctacagaggcaggcaggctgatggcaaggtactgtgttgcgtttgac
accatgaagcagttcagcaaggtgactggcactgagaccttacctgagctgatagaattg
atggtgaagggcagagagttcactgacgtgcagctgagagtgaacgagaagagaaccctg
aacacgttgaacaaggacaagaacaggatcactatcaggtatcccatggagggaaagatc
aaaaacaaagagatgaaggtgaactgtttgattcaagcccagtttggctctattccaatc
caagagtttggacttgcacaggacacagggagaatcttcagaaatggagtccgaatcagc
aggtgcttggcagagttcctaaaccagcgctccaagacaggcttctctgctctactcaac
tccctgatactggccaaatgcttcagggccaagctgtgggaggactctccttacatctca
aagcagctggagaaaatagggttgtctctgtcgacggccatggtgaatgctgggctcacc
agcttcaacaagatagagcagaccaacgccagggaactggagctgattgtcaacagacat
cctccgtttggaaaccaaatcagagacgctgtcatcaatctacccaagtatgaagttagt
ttggagcagcttccaagatacaacatcgccaccgcagagattgccgtgaccgtgaatgta
aaaaaccacgaacagctactgtcaaagagaaccactcatgaccaccactatgtcacaatg
atcatcggggactgtgacaacaacgtggtcttcctgcaaaaactcacagacttgatgctg
ttgaagtcgggaaactggtcaaagaagatcgaagtggcgaaagccttcaaaggagaggag
atcagcgtgaatctaatcagctcagaatacgtggggttggacattcagcagaagtttagt
gccttctactctggaccaaagaggtacggaggtgaatcactcacacctgagcaacatgac
acgatgcaaatagcacaggctaacgctcagagatcacagggtgcaacacagagaatacag
ccaacaggtcagcaaacacaggctacggcacagaagagaacctccacatccacagaaaag
gttccaggcaaaagacaatgtaaccacttctgcaaaaacaaggatcagtgtggccacgac
tgctgtcaaaatggagtgccagtggttctgaagaggcctatgaatcagcattcgagtttc
tcttcctacctccaagacctgaagaccaggagtgacacactgacggagactccagtcaaa
cgcctcaaaatgagaatgagtggtgggactggggctacgaacattcagcaattttcttat
acgcctgctgcttgcaggtatgtaggtaatcatcatggcgcttcatcaatacaacatagt
gtggaatcagctgaggactttgcaacgccccaagagatggcatatcttgagaactatgac
catgagtataatgactacctggaagacatatatcagacaatgggagaagaggaaccacca
cctattcaaacccctacagagtcacaaagcacttcaatgtggaggaaacccagtgcctac
aacggagggtcactcagccacagcaccccccaaagccagggcatgggttactcccaaagc
cacagcactactcaaagccagatcactggttacccacagagccacagcacccaccaaacc
catagcatgggttacccccaaagtcatttcccccttcaaaaccagagtagggaggaaacc
cagagtcacaataccccccaaagccagactagcggttacagcactccccaaagccagagc
aggagttactctccgagtcccatcgtagacttgaccgatgacagtggcttcctctcgtcg
tcacacacccccagcgtgacctttgacctgggagacgaatgggatgattttgacgacgac
aacttagttcacgccagtgagacatcatgcaccactgtagctaaaactcaggggatggac
cgtgacaggctgaaaggtcactcaacaccactaccatccacttatgtacaacccaaaccc
cgcttcactgtgtccagtgccccactcaggtcaacctccccagttgttcctcagatagca
gttactagtctctcagtcagaccacataacctccaggcttctgctccctggagccactct
gacaacaaggccacaaggacattcattgaaccctctgtgaaagcaccctccttcccaaaa
cagactgatgcacgcatggctccgctgggaggacagtttgatttcttctcaaagacgact
accccaaaaaatgacaatgcgactggcaaaaggctccagggagaggacaacagcaaggaa
gtggaggcattcatgggtatatttgatggactattttag
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integrated database retrieval system
