Salvelinus namaycush (lake trout): 120056438
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Entry
120056438 CDS
T07522
Name
(RefSeq) serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
snh04261
Adrenergic signaling in cardiomyocytes
snh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120056438
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
120056438
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
120056438
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120056438
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120056438
03036 Chromosome and associated proteins [BR:
snh03036
]
120056438
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120056438
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120056438
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120056438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
120056438
NCBI-ProteinID:
XP_038860524
UniProt:
A0A8U1C314
LinkDB
All DBs
Position
Sna12:complement(6605259..6759870)
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AA seq
446 aa
AA seq
DB search
MKCFSRYLPYLFRPSSTILSSSCHTEADIISTVEFNPTGELLATGDKGGRVVVFQREQGS
KNQPHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKL
WKVSERDKRPEGYNLKDEEGRIRDPTTITALRVPVLQPMDLMVEATPRRVFSNAHTYHIN
SISVNSDYETYMSTDDLRINLWNLEITNRSFNIVDIKPANMEMLTEVITAAEFQPNQCNT
FVYSSSKGSIRLCDMRASALCDNHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYLM
TRDYLTVKVWDLNMESKPLETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGS
YNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILH
SAWHPSENIIAVAATNNLYIFQDKVN
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgcttctcccggtacctaccttacctcttcagaccctcgagcaccatcctctcc
tccagctgtcacaccgaagctgacatcatatccacggttgagttcaacccaactggagag
ctgctggcgaccggggacaagggagggagagtagtggtgttccagagagaacaggggagt
aagaaccagcctcacaggagaggggagtacaatgtttacagcaccttccagagccacgag
cctgagtttgactacctgaagagcctggagatcgaggagaagatcaacaagatacgatgg
ctgcctcaacagaacgctgcctacttcctcctctccaccaatgataaaacagtgaagctg
tggaaggtcagtgagcgggacaagagaccggagggctacaacctgaaggacgaggaaggg
aggatccgagaccccaccaccatcaccgccctgcgggtaccagtgctgcagcccatggac
ctgatggtggaagccactcccaggcgagtattctccaatgcccacacgtaccacatcaac
tccatctctgtgaacagtgactacgagacctacatgtccacagatgacctgagaattaac
ctgtggaacctggagatcaccaaccgaagtttcaacatcgtggacatcaagccggccaac
atggagatgctgacggaggtgatcacagcagcagagttccaacccaaccagtgtaacacc
ttcgtttacagcagtagcaagggctccatccgactgtgtgacatgagggcctcagcactg
tgtgacaaccactccaaattgttcgaggagccagaggaccccagtaaccgctccttcttc
tccgagatcatatcgtccatctcagacgtcaagttcagccacagcgggcgctacctgatg
acacgggactacctcacggtcaaggtgtgggacctcaacatggagagcaaacctttggag
acctaccaggttcatgactacctgaggagtaagctgtgctccctgtatgagaacgactgc
atcttcgacaagtttgaatgtgtctggaacgggtctgacagtgtgatcatgaccggctcg
tacaacaacttcttccgcatgttcgaccgcaacaccaagcgtgacgtgaccctggaggcg
tcgagagagaacagcaagccccgggccatcctgaagcccaggaaggtgtgtgtagggggc
aagagacgcaaggacgagatcagcgtggacagcctggacttcagcaagaagatcctgcac
agcgcctggcacccctctgagaacatcatcgccgtggccgccaccaacaacctctacata
ttccaagacaaggtcaactaa
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