Salvelinus namaycush (lake trout): 120056469
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Entry
120056469 CDS
T07522
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120056469 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120056469 (smfn)
03009 Ribosome biogenesis [BR:
snh03009
]
120056469 (smfn)
Messenger RNA biogenesis [BR:
snh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120056469 (smfn)
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
RNases
120056469 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
EncFtn-like
Motif
Other DBs
NCBI-GeneID:
120056469
NCBI-ProteinID:
XP_038860566
UniProt:
A0A8U1EUS4
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Position
Sna12:complement(16208830..16231170)
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AA seq
289 aa
AA seq
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MPAFLCTRASAWSFSSKLICKFANFLTLRPSSSQRFSASRHLFLQSSTRWNCAYISVQRK
GLASRRTGLNIVVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACII
TDSELNVLAEGPNLIINTTCELLDGMDDWCKEHHGNSGLTQGVRDSKISLQQAEYEFLSF
IRQHTPPGHCPLAGNSVHADKKFLDKYMPQFMHHLHYRIIDVSTIKELCRRWFPEEYKLA
PQKKASHRALDDIQESIKELHFYRAHVFKSQTEEKKRKILQNCDSNKSV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttcttgtgcactagagcatcagcgtggtcgttcagctcgaaacttatttgc
aagtttgcgaattttcttactcttcgcccaagcagcagtcaaaggttttcagccagtcga
catttatttttgcagtcaagcacacgttggaactgcgcttatatttctgtgcagaggaaa
ggcctagcttcaagacggaccgggctgaatattgttgtacataatatctccacataccgc
aagaaaatgtcatcttcgcggtcagaccctggcatgaggcagaggatggtgtgggtggac
ttggagatgacaggactggacatagagaaggaccagatcattgagatggcgtgcatcata
acagattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaacctgc
gaactgctggacgggatggacgactggtgtaaagaacatcatggcaattctgggttgaca
cagggagtgagggacagtaagatctcgctgcagcaggctgagtacgagttcctctctttc
atcagacagcacaccccaccgggccactgtccccttgcagggaactctgtgcacgctgac
aagaagttcctggacaagtacatgccccagttcatgcaccacctccactacaggatcatc
gacgtgagcacgatcaaggagctctgcagacggtggtttccagaagaatacaagctcgca
ccacagaagaaagcgtctcacagagcactggacgacattcaggagagcatcaaggaactg
cacttctacagagcacacgttttcaaatcgcaaacagaggaaaagaagcgcaagatattg
caaaattgcgacagcaacaaaagtgtttga
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