KEGG   Salvelinus namaycush (lake trout): 120056469
Entry
120056469         CDS       T07522                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120056469 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snh03019]
    120056469 (smfn)
   03009 Ribosome biogenesis [BR:snh03009]
    120056469 (smfn)
Messenger RNA biogenesis [BR:snh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     120056469 (smfn)
Ribosome biogenesis [BR:snh03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    120056469 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like EncFtn-like
Other DBs
NCBI-GeneID: 120056469
NCBI-ProteinID: XP_038860566
UniProt: A0A8U1EUS4
LinkDB
Position
Sna12:complement(16208830..16231170)
AA seq 289 aa
MPAFLCTRASAWSFSSKLICKFANFLTLRPSSSQRFSASRHLFLQSSTRWNCAYISVQRK
GLASRRTGLNIVVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACII
TDSELNVLAEGPNLIINTTCELLDGMDDWCKEHHGNSGLTQGVRDSKISLQQAEYEFLSF
IRQHTPPGHCPLAGNSVHADKKFLDKYMPQFMHHLHYRIIDVSTIKELCRRWFPEEYKLA
PQKKASHRALDDIQESIKELHFYRAHVFKSQTEEKKRKILQNCDSNKSV
NT seq 870 nt   +upstreamnt  +downstreamnt
atgccggcgttcttgtgcactagagcatcagcgtggtcgttcagctcgaaacttatttgc
aagtttgcgaattttcttactcttcgcccaagcagcagtcaaaggttttcagccagtcga
catttatttttgcagtcaagcacacgttggaactgcgcttatatttctgtgcagaggaaa
ggcctagcttcaagacggaccgggctgaatattgttgtacataatatctccacataccgc
aagaaaatgtcatcttcgcggtcagaccctggcatgaggcagaggatggtgtgggtggac
ttggagatgacaggactggacatagagaaggaccagatcattgagatggcgtgcatcata
acagattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaacctgc
gaactgctggacgggatggacgactggtgtaaagaacatcatggcaattctgggttgaca
cagggagtgagggacagtaagatctcgctgcagcaggctgagtacgagttcctctctttc
atcagacagcacaccccaccgggccactgtccccttgcagggaactctgtgcacgctgac
aagaagttcctggacaagtacatgccccagttcatgcaccacctccactacaggatcatc
gacgtgagcacgatcaaggagctctgcagacggtggtttccagaagaatacaagctcgca
ccacagaagaaagcgtctcacagagcactggacgacattcaggagagcatcaaggaactg
cacttctacagagcacacgttttcaaatcgcaaacagaggaaaagaagcgcaagatattg
caaaattgcgacagcaacaaaagtgtttga

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