Salvelinus namaycush (lake trout): 120056523
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Entry
120056523 CDS
T07522
Symbol
dscama
Name
(RefSeq) Down syndrome cell adhesion molecule a isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056523 (dscama)
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
DSCAM family
120056523 (dscama)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
Pur_ac_phosph_N
C2-set_2
V-set_CD47
Ig_6
C2-set_3
Interfer-bind
fn3_2
Motif
Other DBs
NCBI-GeneID:
120056523
NCBI-ProteinID:
XP_038860630
UniProt:
A0A8U1C4D9
LinkDB
All DBs
Position
Sna12:31320977..31458606
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AA seq
1897 aa
AA seq
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MRGNVAVFKCIIPASVEAYITVVSWEKDTVSINVQTPRFLITSTGALYILDVQNEDGLYN
YRCMTRHRYTGETRQSNSARLFLSDPTNSAPAILDGFERREVMTSHRVELPCKASGHPAP
KYRWLKDNRPLEPDSRFRQSVTGLLIERAQPSDTGSYVCEVWNSYGNAEVVGRLQVKEPL
KAVVSPRKVKGSVGSQVSLSCSVSGSEEYELSWYRNGEIIYPGNSVRMTGNNRENLVMAG
MAKSDGGAYQCFARNGKMSAQDFVQVILEDGTPKIISSFSEKVFGTNEFVSLFCTVKGTP
EPRVTWTLDDEPVIRDSRHRIGHYTSQEGHVVSHLNISQTTGPDGGVYRCICNNSAGAVS
YQARINVRGPASIRPMKNLTAIAGRDMYIHCRVIGYPYYSIKWHKDANLLPYNHRQRAFE
NNGTLKLYDVQKDVDEGEYTCSVLVSPSLSTSQSVHVSVKVPPTIHPFEFPRFSIGQRVF
IPCVVMSGDQPVFITWQKDGQPIPASLSVTIDNIDFTSSLRISNLSLLHNGNYTCIARNQ
AATVEHQSQLIVRVPPKFVVQPKDQDGIYGKAVILNCSAEGYPVPTIVWKYSKGAGVPQF
QPIALNSGFRIQVLVNGSLLIKHVLEEDSGYYLCKVSNDVGADVSKSMYLNVKIPAMITS
YPNTTLATQGSEKRMSCTAHGEKPIMVRWEKEERIINPESSHRYVVTVKEVADEVISTLQ
IRPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEVEIREVKDRTIALRWTMGFDG
NSPITGFDIECKNKSGSWEMAQRTKDVSPQLNQATIIDLHPSSTYSIRMFAKNHIGKSEA
SNELTITTDEAAPDGPPQDVQLEAFSSQSIRVSWRAPKKHLQNGAIRGYQVGYREFSTGG
NYQFNVISMETTGDNDHSESVTLDNLKKFTQYGVVVQASNSAGTGPSSQEVISTTLEDVP
SRPPENVQATAASPEIISLSWLTPPKDALNGILLGFRVIYWANLPDGELGEIRNVTTSKP
SLELDGLEKYTNYSIQVLTFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASNSVVFVS
WLPPLKLNGIIRKYTVFCSNPHPTVSSEFEAAPDVFFYRIPNLSRNRQYSIWVVAVTAAG
RGNASDIITVKPQAEAPAQILTFNGTVTTPWMRDIVLPCKAVGDPAPTVKWLKETNGSPA
PAVIDSRRIVQGNGSLVIRTVKAEDSGNYTCVASNSFGPDKIILNLQVQVPPDQPRLTVT
KTTTTSITLSWISGDNGGSSIRGYILQYSEDNSEKWGNFAISPSERSYRLENLKCGTWYK
FTLTAQNAVGPGRISEIIEAKTHGKEPQYSKEQELFTSINATRVRLNLIGWNNGGCPITS
FTLEYRSVESPTWTTAQRTSLTKSYILYDLAEATWYELQMKVFNSAGSAEKRVKFSTLSY
DGSTIAPLVKAPTVTVDSTSSNEGLKMVTIISCVLVGIVLVFVLLLVLRRRRREQRLKRL
RDAKSLAEMLMSKNTRPADTINKQQQTLRMHIDIPRAQLLIEERDTMETVDDRSTVLLTD
NDFGETQKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTNPTARRTAKAGPVARNRYAS
QWTLNRPHPPVSAHTLSTDWRLPTPRVAGSVDKESDSYSVSPSQDTDRARSSMVSTESAS
STYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTAGTNDYTDSLTSSTPSESGI
CRFTASPPKPQDVSRVMNMAAPKAHRPGELVHLPPYLRMDFLLNRGISCSGTGGRGGAGG
EGAMGQACLEPQKSRSLKRPSRMAPPTPTEAPQASSRASSRDPVAQWQPGSAVTLPHREG
SELAQAAKLSTSQESLLDSRGHLKQTNNPYAKSYTLV
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcaatgtggcggtgttcaagtgcattatcccagcctcggtggaggcctacatc
actgttgtgtcctgggagaaagacacagtgtctatcaacgtccagacgccgcggttcctc
atcacctccacaggagccctgtacatcctggacgtgcagaatgaggatggattgtataac
tacaggtgtatgacacgccaccgctacacgggagagaccaggcagagcaacagtgcacgt
ctctttttgtcagaccccactaactcggcaccggccatcctggatggctttgagcgtcgc
gaggtgatgacatcacaccgggtggagctgccatgcaaggcatctggtcacccggccccc
aaataccgctggctgaaggacaaccgaccgctggagccggacagccgcttcaggcagagt
gtgacgggcctgctgatcgagagggcccagcccagtgacacggggagctacgtgtgtgag
gtgtggaacagctatggcaatgcagaggtggtggggaggctgcaggtcaaagaaccgctg
aaggcggtggtcagcccgaggaaggtgaaaggcagcgtgggtagccaggtgtctctgtcg
tgcagcgtgagtggctcggaggagtacgagctgtcctggtaccggaatggagagatcatc
taccctggaaacagtgtccgcatgactggaaacaaccgggagaacctggtcatggctggg
atggctaagagtgatggaggagcctaccagtgcttcgccaggaacggcaagatgtccgcc
caggactttgtccaggtcatcctggaagatggcacgcccaagatcatctcctccttcagt
gagaaagtgtttggaaccaacgagtttgtgtcactattctgcacggtgaaaggcactccg
gagcccagggtgacgtggacgctggacgacgagccggtgatcagggactcccgccaccgc
attggccactacaccagccaggagggccatgtggtcagccacctgaacatcagccagacc
acggggccggacgggggtgtctaccggtgcatctgcaacaattcggccggggcggtctcc
taccaggcgcgaataaacgtaagagggcctgccagcatacgaccaatgaaaaacctcact
gccattgctgggcgggacatgtatatccactgccgcgtcattggctacccgtactactcc
atcaagtggcacaaggatgccaacctgctcccctataaccaccggcagcgggcgtttgag
aacaatggcacgctaaagctgtatgatgtacagaaggatgtggatgagggagagtacacg
tgtagcgtgctggtctcaccttctctctccaccagccaaagtgtgcacgtcagtgtgaaa
gttcctcccaccatccatccctttgagttcccacgtttctccatcggccagcgtgtgttc
attccgtgtgtggtgatgtcaggtgaccagcctgtcttcatcacatggcagaaggacggt
cagccaatcccggccagcctgagtgtaaccatcgacaacatagacttcaccagctccctg
cgtatctccaacctgtctctcctgcacaatggcaactacacctgcattgcacgcaaccag
gccgccaccgtggaacaccagagtcagctcattgtcagggtccctcccaaatttgtggtg
cagcccaaggaccaggatggcatctatgggaaagctgtgatcctcaactgctctgcagag
ggataccccgtccctaccatagtgtggaagtattccaaaggtgcgggggttccccagttc
cagcctatagccctgaactcaggcttccgtatccaggtgctggtcaacggctctctgcta
atcaaacacgtgctggaggaggacagtggctactacttgtgtaaggtcagcaatgacgtg
ggagctgacgtcagcaagtccatgtacctcaacgtcaaaatcccggccatgatcacgtca
taccccaacaccacgctggccacgcagggcagtgagaagaggatgagctgcacggcccac
ggggagaaacccatcatggtgcgctgggagaaggaggagcgcatcatcaacccggagagc
agccaccgctacgtggtcaccgtcaaagaggtggccgacgaggtcatctccaccctgcag
atccggcctacagtgagggaagactctggctttttctcctgccatgccatcaactcctat
ggtgaagacagagggatcattcagctaacagttcaagaacccccggaccctcctgaggtg
gagatcagagaggtgaaggacagaaccatcgccctccgctggaccatgggcttcgatgga
aacagcccaatcacaggcttcgacattgagtgcaagaacaaatcaggctcctgggaaatg
gcccaaaggaccaaagacgtgtctccccagctcaaccaggccaccatcatagacctgcac
ccctcctccacctacagcatccgcatgttcgccaagaaccacatcggcaagagtgaggcc
agcaacgaactcaccatcaccacagacgaagcagctcctgatggtcccccacaagatgtg
cagcttgaagctttctcctctcagagcatcagagtctcctggagggcccctaagaagcac
ctccagaacggggcgatccgtggctaccaggtgggctacagggagttcagcaccgggggg
aactaccagttcaacgtcatcagcatggagacgacgggggacaacgaccacagtgagagc
gtcaccctggacaacctgaagaagttcacccagtatggggtggtggtgcaggccagcaac
agcgctgggacaggaccctcctcccaggaggtcatttctaccactttggaggacgtaccc
agccggcctccagagaacgtccaggccacagcagcgtctccagagatcatctctctatcc
tggctgacccctcctaaagacgctctcaacggcatcctgctcggcttcagagtcatctac
tgggctaacctgcccgacggagagctgggggagatccgtaacgtgaccacctctaagccg
tctctggagctggatggtctggagaagtacaccaactacagcatccaggtgctgaccttc
acccgggccggggacggggtgcgcagcgagcagatcttcacccgcaccaaggaggacgtt
cctggtcctccggctggggtgaaggcagcggcggcgtctaactcggtggtgtttgtgtcg
tggctccctcctctcaaactcaacggcattatcaggaaatacacagtcttctgctctaac
ccacaccccacggtgagcagtgagtttgaagcagctccagacgtcttcttctaccgcatc
cccaacctgagcaggaaccgccagtacagcatctgggtggtggccgtcaccgcagccggc
cgtggcaacgccagcgacatcatcaccgtcaagccccaggccgaggctcctgctcagatc
ctgacattcaacggcacagtgaccaccccctggatgagggacatcgtgttgccctgtaag
gcggtgggcgacccagcccccacggtcaagtggctcaaggagaccaatggaagccccgcc
cctgctgtgattgacagtagacgcattgttcagggcaacggcagcctggtcatccgcaca
gtgaaagctgaggattctgggaactacacctgtgtggctagcaacagttttgggccagat
aaaatcatcctcaacctgcaggttcaagttcccccggatcagcctcgtctcaccgttacc
aagacgaccaccacttcaatcactctgtcctggatatcaggagacaacggaggcagctcc
atacgaggctacatcctgcaatactcagaggacaacagtgagaagtggggaaactttgcc
atcagccctagtgagcgttcctatcgactggagaacctgaagtgtggcacctggtacaag
ttcaccctgactgcccagaatgctgtggggccagggcgcatcagtgagatcatcgaggct
aagactcatgggaaagaaccccagtactctaaagaacaggagctcttcaccagtatcaat
gccacgcgtgtcaggctcaacctgattggctggaacaacggcggctgtccaatcacgtcc
ttcacgttagagtaccgttcggtggagtctcccacgtggaccacggcccagcgcacctct
ctgaccaagagctacatcctgtatgacctggccgaggccacctggtatgaactgcagatg
aaggtgttcaacagcgccgggtcagcagagaagagggtcaagttttccactctgagctac
gatggcagtaccattgctccactggtgaaggctccaacggtgactgtggacagtacgtcc
agtaacgagggtctgaagatggtgaccatcatctcctgtgtgctggtgggaatcgtgctg
gtcttcgtcctgctgctagtcctcaggaggagaaggagggaacagagactgaagaggctc
agagatgcgaaaagtttggcagagatgctgatgagtaaaaacacacgacctgcagacacc
atcaacaagcagcagcagacccttagaatgcacatcgacatcccccgagcccagctgctc
atagaggagagagacaccatggagacagtcgacgacaggtccacagtgctgctgactgac
aatgactttggggagactcagaaacagaagtcatctacggttacccacaccgtccactac
cagtccctgtcccaggccaccggacctctagtggatgtgtctgatgctaggccaggaacc
aatcccacagcccgccgcacagccaaagcaggccctgttgcacgcaaccgctacgctagc
cagtggaccctgaaccgaccacacccgccagtctcggcccacaccctgagcactgactgg
agattgcccacaccacgggtggccggctctgtggacaaggagagtgacagctacagcgtc
agcccatctcaggacacagaccgtgcacggagcagcatggtgtccacagagagcgcctcg
tccacctacgaggagctggcgcgggcctacgagcacgccaagatggaggagcagctgcgg
cacgccaagtttaccatcacagagtgcttcatctcggatacgtcgtcggagcagatgaca
gcaggcacaaatgactacacagacagcctgacgtccagcacaccctccgagtcaggcatc
tgcaggttcactgcctccccgcccaagcctcaggatgtcagccgagtcatgaacatggcc
gcacccaaagctcacagaccgggtgagctagtgcacctgcctccttacctgcgcatggac
ttcctgctgaaccgcggtatatcgtgctcgggcactggagggaggggtggcgccgggggg
gagggggccatgggccaggcctgcttggagccccagaagagtcgctccctgaaacggcca
tcacgcatggcgcccccaactcccacggaggccccccaggccagcagcagggccagcagc
agggacccagtggcccagtggcaacccggctcagcagtcaccctgccccacagagagggc
tcagagctggcccaggccgccaagcttagcacctcccaagagtccctgcttgactcacga
ggacacctcaaacagaccaacaacccctacgcaaagtcctacacgctggtataa
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