Salvelinus namaycush (lake trout): 120056589
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Entry
120056589 CDS
T07522
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
snh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120056589
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120056589
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snh01002
]
120056589
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120056589
03036 Chromosome and associated proteins [BR:
snh03036
]
120056589
03400 DNA repair and recombination proteins [BR:
snh03400
]
120056589
Peptidases and inhibitors [BR:
snh01002
]
Metallo peptidases
Family M67
120056589
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120056589
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120056589
BRISC complex
120056589
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
120056589
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
120056589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
120056589
NCBI-ProteinID:
XP_038860707
UniProt:
A0A8U1BWE2
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All DBs
Position
Sna12:complement(41133791..41139187)
Genome browser
AA seq
272 aa
AA seq
DB search
MQASIGSRNYLFNFLHTGHIQMVSRRSPDSGEVDKAISEKLAFGKFEVDTNRIVHIHSVI
ILRRSDKRKDRVEISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRT
QAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVIPHEA
IGKVCLESAVELPRILCQEEQDTYRKIHSLTQLDPITKIHNGSVFTKNLCSQMSAVSGPL
LQWLEDRLEQNKQNIIELQLEKDRLTQELATM
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctagcattggctcgcgaaactacctctttaacttccttcatactggacacata
caaatggtatccaggcgttcacctgactctggggaagtggataaagctatatccgaaaaa
ctggcatttggaaagtttgaggtggacacaaatcgcatcgtccacattcattctgttatt
attctccgacgctcggacaagaggaaggatcgtgtggaaatttcgcctgagcagctgtct
tcagcggcaaccgaagcggagaggttggctgaaatgactggacggccgatgcgtgtagtt
ggttggtaccactctcacccccacatcactgtgtggccatcacatgtggatgtgaggaca
caggccatgtatcaaatgatggaccagggctttgttgggctgatattctcctgcttcatt
gaggataagaacacaaaaactggtcgagttctctacacctgcttccagtctgtccaagcc
cagaaaggctctgagtacgagagaatcgagatcccaattcatgtgattccacacgaggcc
attgggaaagtgtgccttgaatcagcagtggagcttcccagaatcctctgccaggaagag
caggacacctacagaaagattcacagcttaactcaactggatccgatcacgaagatacac
aatggctcagtcttcactaagaacctgtgcagccagatgtctgctgtgagtggtcccctg
ctgcagtggctggaggatcgtctggagcagaacaaacagaacatcattgagctgcagctg
gagaaagacagactaactcaggagttggcaactatgtga
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