Salvelinus namaycush (lake trout): 120056671
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Entry
120056671 CDS
T07522
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120056671
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120056671
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
120056671
NCBI-ProteinID:
XP_038860808
UniProt:
A0A8U1BRY2
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Position
Sna12:48045375..48047400
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AA seq
319 aa
AA seq
DB search
MYNIIEHQLKSSVPSHHPGTGMPPANGVGGHEGGHTGSKLPTIQPDPMDKVKRPMNAFMV
WSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPDYKY
KPRRKTKPMPKNNTLAAQYQMSAGNHLLSASAAQGQVGNPRMDAYGWGHTGGYTAAMQSE
ALGYSQQLHRYDLSALQYQSSMAQAQAYMNGANAYSPMSYNSSPQQVSPVMSMVKQQSDS
HSMSPSPTGPHSPLQQHHHQAHQQHQTQRGIQVQGDHLRDMISMYMPGGDAPEAQRGYSV
SAANIQQHYLGGSAPLTHL
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatagagcaccaactcaagtcctctgttccttcacatcatcctggaaca
gggatgccacctgcgaacggagtaggggggcacgagggcggccacacaggttccaaatta
ccgacaatccaacctgacccgatggacaaagtcaagcggcccatgaatgccttcatggtc
tggtctcgcggtgagcgacggaaaatggcccaggaaaatcccaaaatgcacaattctgag
atatccaaacggctgggtgtcgcgtggaaatctctaacagacgccgagaaaaggcccttc
attgacgaggcaaagcgcctccgcgcggtgcacatgaaggattatccggactataaatac
aagccccgtcgtaaaaccaaaccgatgccgaagaacaatactctagccgcccagtatcag
atgtcggccggtaaccacctgctgagtgcgtccgcggctcagggacaagttggaaacccc
agaatggacgcatatggctggggccacacagggggctacactgcggcgatgcagagcgag
gcgctcggctacagccagcagcttcaccgctatgacctctcagcacttcagtatcagtcc
agcatggcccaggcccaagcctacatgaatggtgccaacgcatacagccccatgtcctac
aacagcagcccacagcaggtcagcccagtgatgtccatggtgaagcagcagtctgatagc
cacagcatgtccccctcccccaccgggccccacagccccctccagcagcaccaccaccag
gcccaccagcagcaccagacccagcgtggtatccaggtccagggagaccatctcagggac
atgatcagcatgtacatgcctggaggagatgccccagaggcccagagagggtactccgtc
tctgcagcaaacatccagcagcattacctgggagggtcagctccactcacccacctttga
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