Salvelinus namaycush (lake trout): 120056973
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Entry
120056973 CDS
T07522
Name
(RefSeq) HMG box transcription factor BBX-like
KO
K21643
HMG box transcription factor BBX
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120056973
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120056973
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
120056973
NCBI-ProteinID:
XP_038861230
UniProt:
A0A8U1C5B2
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Position
Sna12:17644860..17683879
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AA seq
883 aa
AA seq
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MKGGGRGKEPPVEVSCKRPKRKCLQWHPLLSKKALDFSEEEEEDEEELEKEPLLVRETRG
PKVPCGGPMEGEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
LEPKEKQKYTDMAKEYKDAFMKANPGYKWCPATNKPVKSPCHTVSNTRNKVWSFPSNSPK
GCATAKKVPKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTAREISSSSSQSGATDVTK
YPDKSSLFQLAEISSSTRQPSLMDTAGKGKPLSWGDQAEMWSGTSQLGKPDVPTANVKSP
LFQLGEQISSDSSQSTAPEGKQCGQSALFQLAEMCLASEAGKMETQDDTCTPHIKTETVV
EEARDNTPDLPLSFPPSSSSMPTDASLLLLSGQAAIIKKKKDASTREPAKVVDKDKSPGP
GSPKKTLKKRPSSESELESLFYTIEAVAKGAWGDAEEDMPKKKARTAAVTILVESSSPKK
RAKPKAKRPLKAKEDERNVKDKEDDGCIELPLTVETVVNPASPKTEAKEANISSSTEEPT
SPPSPPRIKHKVGERELEANAEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRG
SFRSASDEGGWTDETWAFSQMGPSNFKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYS
PLTFDKKSTVVTKKKTDINTALEEQPPKPAKGPSPSQKNTLFHKIVSKYKEKKEKPNTLD
KDIAMRSDSPMLDSAAKATKAKPSPAPCTTATLNPEAMGTSPSVPVGSQKRKARKSKITH
LVRSADGRVSPAEEDKARDLTPEQDDKPLSQDTLCNETGCYSASKQEEADRSSAPEDLPA
FFSLAALAEVAAMENIHRGQHVIGDSQKKDMAKTPVLISCADQ
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaagaggtaaggagcctccggtggaggtgagctgcaagcggcccaag
cgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttttcagaggag
gaagaggaggacgaagaagaactagagaaggagccattgttggtcagggagacccggggg
ccgaaggtgccatgcggggggcccatggagggggaagaggactcttcagagcagcgggcc
cgccggcccatgaatgccttcctgcttttctgcaagcgccaccgatcgctggtgaggcag
gaacaccctcgactggacaaccgtggtgccaccaagatcttggctgactggtgggccgtg
ctggagcccaaagagaaacagaagtacaccgacatggccaaggagtacaaagatgccttc
atgaaggctaacccgggctacaagtggtgccctgccaccaacaagccagtcaagagcccc
tgccacactgtcagcaacacccgcaataaagtgtggtccttcccttccaactcccctaag
ggttgtgccactgccaagaaagtgcccaagactgacagcacaccacagcttaacttcgcc
atggcagatcccacgaagatgggtggcctaagcatgctactgttggctggggagcatgcc
cttactgccagagagatttcctccagctcatcacaatctggagccacagatgtcactaag
taccctgataaatcctccctattccaacttgctgagatctcttccagcacgcgtcagccc
agtttaatggacaccgctggcaaagggaagcccttgagttggggggaccaggctgaaatg
tggtctggaacctcacagctgggaaagcctgacgtacccactgccaatgtcaagtcccct
ctttttcaactgggagagcagatctcctctgattcgagccagtcgactgcaccagaggga
aagcagtgtggccagtccgctctcttccagcttgctgagatgtgcttggcctccgaggca
gggaagatggagacacaggacgatacctgcaccccacacatcaaaactgagacggtggtc
gaggaggctagggacaacacccctgatcttcctctctcctttcccccgtcttcctcctcc
atgccgaccgatgctagtctcctgctgctcagcggccaagcggccataatcaaaaagaaa
aaagacgccagcaccagagagccggccaaagtggtggacaaagacaagagccctggtccc
ggctcgcccaaaaagaccctcaagaagcgaccgtcatccgagtcggagttggagagcctc
ttctacactatcgaagccgtggctaaaggggcctggggcgacgccgaggaggatatgccc
aagaagaaggctcgcaccgccgccgttaccattctggtagagtccagctcacccaaaaag
agggccaagcccaaagccaagaggcccctgaaggctaaggaagatgagagaaatgtgaag
gacaaagaggacgacggatgcatagagcttccattgacagtggagacggtggtgaatcca
gcaagccccaagacagaggctaaggaggccaatattagcagcagcacggaggagcccacc
tcccctcccagccccccgcgcatcaagcacaaagtcggggagagggaactggaggccaac
gcagaggggtgtggctccagaaagtctgagagaagctgcaagggggcgctgtacaagacc
ctggtttcggaagggatgctgacctcactgagggccaacgtggacagaggcaaaagaggt
tcttttcgaagtgcatctgatgaaggaggctggactgacgagacctgggctttctcacag
atgggacccagtaatttcaagaagcttaagaagtccaaatctaaagacgagaccgcgcca
ggtttggggaaactagaggaggagtttgagaagaagttcaacagcctgccgcagtacagc
cctctgacattcgacaaaaagagcactgtcgtcaccaagaagaaaactgacattaacacc
gccctggaggaacaacctccaaaacctgccaagggtccatctccatctcagaaaaatact
ttattccacaagattgttagcaaatacaaggagaaaaaggagaagcccaatactttggac
aaagacatagcgatgcgtagtgactcccccatgttagactcggctgccaaggccacaaag
gcaaagccgagcccagccccctgtaccaccgccacgctgaacccagaagccatgggaact
agccctagcgtgccagtgggcagccagaaaaggaaggccaggaagagcaagatcacacac
ctggtgcgctcggccgatggcagggtgtccccagccgaagaggacaaagccagggacctg
accccggagcaggatgacaagccattatcccaagatactttatgcaatgaaacagggtgt
tacagcgcatccaagcaagaggaggcggacaggagcagtgcacctgaagacctgcctgcc
ttctttagcctggctgcccttgcagaggtggcagccatggagaacattcacagaggccag
catgtgattggtgacagccagaagaaggacatggccaagacccctgtgctcatctcctgc
gctgaccaatga
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