Salvelinus namaycush (lake trout): 120057063
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Entry
120057063 CDS
T07522
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04142
Lysosome
snh04144
Endocytosis
snh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120057063
04142 Lysosome
120057063
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120057063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120057063
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120057063
Membrane trafficking [BR:
snh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
120057063
Exosome [BR:
snh04147
]
Exosomal proteins
Proteins found in most exosomes
120057063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
120057063
NCBI-ProteinID:
XP_038861374
UniProt:
A0A8U1C3V1
LinkDB
All DBs
Position
Sna12:28058352..28109514
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLT
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDK
LETSESLRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYPQAPQAQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccccaacacg
cccatccgcagaccaatctctgcagacagcgccatcatgaaccccgcctccaaagtcatt
gcacttaaagacgccgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgactgatgatgtcaccttctggaagtggatctccctgaacacagtg
gcacttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagaagtggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggt
gccatgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgca
ggctttgcccagttcaagatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggccgggggaaagttgcacatcattgaggtgggcaccccagccacaggg
aaccagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgac
ttcccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagc
ggagagaccatctttgttacggcccctcacgaagccaccgccggcatcattggggtcaac
aggaaaggacaggttctgtcagtgtgtgttgaggaggagaacatcatcccttacatcacc
aatgtgctgcagaacccagacctggccctgcgcatggccgtccgtaacaacctggccggg
gccgaggagctgttcgcgcgcaagttcaacaacctgtttgctggcggaaactactctgaa
gctgccaaggtggccgccaacgcaccaaagggtatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgcttgagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaacgtacccaacaaggtcatccagtgcttcgctgagaccggacaattcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aatgtgatgaggatcagtccagaacagggcctgcagttctcccagatgcttgtccaggac
gaggagcctctggctgacattacacagatcgtggatgtctttatggagtataacctgatc
cagcagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgagggacca
ctgcagacacgcctcctggagatgaacctcatgcacgccccacaggttgctgatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggtctgctgcagagagctttagagcattacaccgacctgtacgacatcaaacgggcc
gtggtgcacacacacctgctcaacccagagtggctggtgaacttctttggctccctctca
gtggaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactccctaacg
gagctcttcgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgccgagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaggccaagctgacagaccagctcccactcatcattgtgtgtgac
cgcttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatac
attgagatctatgtgcagaaagtgaaccccagccgtctgccagtggtgataggagggctt
ctggatgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgacgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctc
ccctggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctg
gccaagatctacatcgacagcaacaacaaccctgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgcgagaagagggaccctcacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtg
ctgctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctg
tctgagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ttgcccaacgaactcattgagctgctggagaagatcgtactggataactctgtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacggccatcaaggcagaccggacccgt
gtgatggagtacatcaaccgcctggacaactatgacgccccagatatcgccaacatcgcc
atcagcaacgagcttttcgaggaggcctttgctatcttcaggaagtttgacgttaacacc
tctgccgtgcaggttctcattgagcacattgggaacctggaccgggcctatgagtttgcc
gagcgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggc
ctggtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggctgccgaccagagtggtaactgggaggacctggtgaagttccttcagatg
gctcgtaagaaggcccgggagtcctatgtggagacagagctcatctttgccctggccaag
accaaccgcctggctgagctggaagagttcatcaatggacccaacaacgcccacatccaa
caggtcggcgaccgctgttacgacgagaaaatgtatgacgcggccaagttattgtacaac
aacgtgtccaacttcggccgactggcgtccaccctggtgcacctcggggagtaccaggcg
gcagtagatggggcgcgcaaggccaacagcactaggacctggaaggaggtgtgctttgcc
tgcgtggatggaaaggagttccggctggcccagatgtgtggcctccacatcgtggtgcat
gctgacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggaacgggcgcacatgggcatgttcaccgag
ctggccatcctctactccaaattcaaaccccagaagatgagagagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcagaggaggcccacctgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggct
ctgaggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttg
gagaaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcag
tacgcgtcagagtccaaggacacagagttggctgaggagctgctgggctggttcctgacg
gaggacaaaaaggagtgctttgctgcctgcctcttcacctgttacgacctgctgaggcca
gacgtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaag
ctggagacctctgagtccctaaggaaagaggaggagcaggcgacagagacacaacccatt
gtctatggcacaccccagcttatgctgactgctggccccagcgtgcccgtgcccccccag
caggcctacggctacggttaccaggctcctgcaggctacccccaagcacctcaggcccaa
ccaggctttggctacggcatgtaa
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integrated database retrieval system
