Salvelinus namaycush (lake trout): 120057064
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Entry
120057064 CDS
T07522
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
snh04054
]
120057064
Pattern recognition receptors [BR:
snh04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
120057064
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
TIR
LRR_1
TIR_2
LRR_9
LRR_EndoS
LRR_6
LRR_LRWD1
ThsB_TIR
Motif
Other DBs
NCBI-GeneID:
120057064
NCBI-ProteinID:
XP_038861380
UniProt:
A0A8U1C5J2
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All DBs
Position
Sna1:complement(79642200..79645100)
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AA seq
966 aa
AA seq
DB search
MKSKITMPEIRNGTTYSQPSIFLCTLLCCWILVNPVRGYSLKKCTVRESLNDTNMKVICG
KKNLQAIPEDIPRKVRSLDLSINNIVMIKTFDFKDLSALKSLNMSCNRISHVDDEAFSDL
VVLQELNLANNRLNTLSDHLFQGLGNLSVLRLDHNHIKTISSSTFQNLFSLNVLNLTGNQ
LYVLKKVQTVLLFTHLQELYIASNGFTFFQSQDISNKSIGLRVLDLSQNPMRIFRITADV
LPKLHYLNLSDSGQNGSMTWDVPDRSFLSNMKSLNLSGVHMSLKEMSVVLQSLNSSLSSL
ILSHLGEDRITALANIACHITTLTTLRLRYNNMRVVSEELLKSCTYLTKLDISHNALTHL
SHQSFSSMKQLTTLDLSNNRLSSVPNATHNIQSLTILDLRYNTINKLGSFDFANLTGLTY
LRLFHNEITDIKGTDFQDLQDLKLLDLGRNSIPSLRYVFKNCLQKLENLQLGGNMIRTIH
KGDFESLQSLKTLILFDNRIDTVEDGAFQGLVNLKMLTLASNRMSQISIRATMFRGLTAL
ESLDLSWNRIKYLHYGELKSPPFSLLPSLKILIVSAQHPFGMLNIPSNFLHGLTNLLAFS
ARSLNIKTFHPDTFNNTPQLWSLDISLNEFTALSKELFHPIPRLNRLYLSKAQLQSLDFL
IGANLTQLSYLQVRKNDFTVVSETMIRSLPALVYLDLQDKTFTCDCSNAWFIQWVTTENQ
TQVVDAYDFTCNYPVSLGGTKLLDLDTHYCSVDIGFFYFISSTSLVLLTLLGSFIYHLLR
WQVVYAYYLFQAYLYDTKRRNVRVIHQYDAFVSYNGHDEPWVLRELLPELEGNQGWKLCL
HHRDFQPGKPIVDNITDAIYGSRKTICVISRHYLESEWCSREIQVASFRLFDEQKDVLIL
VFLEEVPDQQLSPFHRMRKLVKRHTYLSWPRAGEHTGVFWQKLRVALETRDCLAEENPIL
SGVDRK
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaagataaccatgccggaaatacgcaatgggactacatattcacaaccaagt
atttttctgtgcactcttctatgttgctggatccttgtaaatccagtaaggggctattca
ttgaaaaaatgcacagtccgtgaatctctcaatgataccaacatgaaagtaatctgtgga
aagaagaacctccaagccataccggaagacattccaagaaaagtaagatctttagacctt
tccatcaacaacattgtgatgatcaaaacatttgatttcaaagatctctcagccctcaaa
tctttaaacatgtcctgcaaccggatctctcatgtggacgatgaggctttttcagacctg
gtcgttcttcaggagctgaatctagccaataacagactcaacaccctctcagaccacctg
tttcagggcctaggcaacctctccgttcttcgactagaccacaaccacatcaaaaccatt
tcatcctctacctttcagaatctctttagcttaaatgtactaaacttaaccggcaaccaa
ctttatgttctaaagaaggttcagacagtcttgctattcacacacctgcaggagttgtac
attgcaagcaacggatttacctttttccagtcacaggacatatcaaataagtccatagga
ctgagagtgctggatttatcccagaatccaatgagaatcttcaggatcacagctgatgtt
cttcctaaactccactatttaaacctctctgactctggtcaaaatggaagcatgacatgg
gacgtaccagacagatcttttctgagtaatatgaaaagtctcaatttgagcggtgtccac
atgtctttgaaggaaatgagtgtggtactgcagagcctcaactcatcattatcatctctc
atactgtctcatttaggggaagataggatcacggctctcgccaacattgcctgccatatt
actacactgacaacactccgtctgcgttataacaacatgagggttgtctctgaggaactg
cttaagtcctgcacatacttgactaaattggatatatcccataatgctcttactcatctg
tctcatcagtcattcagctcaatgaagcaactgactactctagatctaagtaacaatagg
ctttcttctgtgccaaatgccactcataatatccaatcgctgacaatcttggatctcaga
tacaataccatcaataaactaggctcattcgattttgccaatctgacaggactaacatac
ctccgtcttttccacaatgaaatcactgacattaaaggaactgattttcaagatttgcag
gacttaaaactcctagatctgggaagaaacagtatcccatctttacgttatgtttttaag
aattgtttgcaaaaactagaaaacttgcaattgggaggcaatatgataagaactatccat
aaaggagactttgaaagcctacaatccctcaaaactttgattttatttgacaaccgaatt
gacactgtggaagatggggcctttcagggtttggtcaatcttaaaatgcttactttggca
tcgaatagaatgagtcaaataagcattagggccactatgttcagaggactgacagcctta
gaaagtcttgatttgagttggaatcgtattaaatatctacattatggtgaacttaaatcc
ccacccttttctcttctgccgtcactcaagatcctgatcgtctccgctcagcatcctttt
ggaatgttgaatataccatccaactttcttcatggtctgacaaatttattggcgttcagc
gcaaggagtcttaacattaagacctttcacccagacacattcaacaacacaccacagttg
tggtcccttgacatcagcctgaatgagttcacagccctgagcaaggagttgtttcacccg
atcccacgactcaacaggctatacctgtctaaagcccaacttcagtctttagattttctc
ataggagccaacctcactcaactcagttacttacaggtgagaaagaatgactttacagta
gtcagtgagacaatgatacgttctttacctgctttagtttacttggacctgcaagacaag
actttcacctgtgactgcagcaatgcttggtttatccagtgggtgacaacagaaaaccaa
acgcaggttgttgatgcatatgactttacctgcaactatccggtcagtctaggaggtacc
aaactgttggaccttgacacccactactgttcagtagatataggattcttctacttcatc
tcctccacttctctggtcctcttaaccttgctggggtcctttatctaccatctcctgaga
tggcaggtggtctacgcctactatctctttcaggcttatctctatgacacaaagcggagg
aacgtccgtgtgattcatcagtatgatgcctttgtctcctacaatggccacgatgagccc
tgggtcctgagggaacttctgccagagctggagggaaaccaaggctggaagctgtgtctg
catcaccgtgacttccagccaggcaaacccatcgtagacaacatcacagacgccatctac
gggagccgcaagaccatctgcgtgatcagccgtcactacctggagagtgagtggtgctcc
cgggagatccaagtggccagcttccgtctgtttgatgagcagaaggacgttctgatcctg
gtgtttctggaggaggtcccagaccagcagctctcccccttccaccggatgagaaagctg
gtgaagagacacacctacctgagctggcccagagctggggagcacaccggagtcttctgg
cagaaactccgggtggctctggagaccagggactgccttgctgaggagaaccccatcctg
tctggggtggatagaaaatga
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