Salvelinus namaycush (lake trout): 120057095
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Entry
120057095 CDS
T07522
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120057095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057095
03036 Chromosome and associated proteins [BR:
snh03036
]
120057095
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120057095
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120057095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
120057095
NCBI-ProteinID:
XP_038861430
UniProt:
A0A8U1BQG1
LinkDB
All DBs
Position
Sna12:31696849..31727710
Genome browser
AA seq
1840 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNSTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGVSSGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQASQPGT
TVKFNPPTGSDTMVKGGVTASINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGIFGAAAAATPSTGATGLFGSSATNTGFSFGQAKTTFGTSAGGFGAATGSLFGQQQ
PQQAQQAVSLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGATAASQAGGLFGN
TAQTAPATGFGTGAGLFGQTSTAFGNIGTQQGLFGNKTAGFGVTTTSAPSFGTGTGLFGN
KPALTLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAVGTGQMSLFGNNKT
LGSTLGTMGGFGVQGFSTGNSTLGFGAPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFG
DSPLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQ
LFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPLNRDSDDLSSPPEYPLNGLG
ASVDEDDDVREVVEGGAEDDLEIKFYAKPSLQDTISELNAHRMGAGGRNGLQVSSEDISL
GDDSIQEERVEEGPPHPAGIVLGRVGYYTIPAMEELAKMVDENGVCVVENFTVGRKGYGS
VFFHGEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPPEGEGLNRRAEVTLDGVWPNDKTTC
TQIKSPERLSEINYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDKEV
PLKVDPKKLKTATRLPPGLQQLPPSQQQVAPQAQSTAVLELLNRVLEVDSDMADITQDAP
GESMLGEEEGESGIGEKGSRLGNVTHTEHDSVSASSQIASSLGINPHTLQIMKASLFAED
DDGDMFQEQGGMTSSLDVASPHIHLPGTQGRPSIGGLLQTRFSSAGLFFQLPDVPFGGGL
PGRLSRVSPAVPEPSRVSPWPSFFLPAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLL
MDVALFTGRSFRVGWGPGWTLVHCGDGLSGAGDKEQDHGDTGATGFGFLPKPAKSRRLSD
SPFKVVIEQVVGLELRDSEESQAVYQRPLEISLKHSSISTEGPCPFIQPQSGVAALHEYA
EWITDLNQEAGAGDAVLGHWAQVWTLCEALWGRRCSAVPGTSGYLQQMERRRSFSAWLSH
SATQRIEQEVGLNKGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGR
ELLALQLGDWNRMQTDSFLPEERLRIFALLAGKPVWQSTDCEVNVCSELDWRRCMAVHLW
YMLPPTASIAEALAKYEAAFQGSAEGQKYACAPLPPYLDQSDQPDMEEEESKRPLYDICF
HLLKLYSDRHYSLQQLLDPLAVTWECLDYRLSWHLWSVLQALHYTHLSPARQGLIHTSYA
AQLESAGLWDMAIYVLLHIPDNTLRELAVREMLQLHCPLLETEESAKKEHFLTERLLIPE
QWLHQAKATRARRDTDRHGEALHLYRAGHWNLCHSLVIQHLASGVHVNTHARAHTPRQPL
TLFPCLCAISPVDCIINDNHEYLLEFLEGLAVPERSSVIQDWDTAGRVYLDYIGVIQTLH
AIQQMDSTGYELECLHTEVTSLCSRIELLPCSTAKDRLAQSEMAKCVANILRVVLSLQQG
GEIPLSQLASNIGRLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacttca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacagcactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctttttggt
tccagtaccttcagccagcccgtgacgtcatccaccagtagcggctttggctttggcgtg
tccagcggcacctccaccagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagagcaatgccttcggcgctgccaaaccagcctcatttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcgaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggcttcccagccaggcacc
actgtcaagttcaaccctccaacaggaagtgacaccatggtgaaagggggtgtgacggca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacagggggtatctttggggctgcagccgcagccacccccagtacaggggctaca
gggctgtttggctcctcagccactaacacaggcttctcctttggccaggccaaaaccacc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggcccagcaggcagtcagcctgttcaagcccttcggccaggccacaaccacc
cccaacacaggcttctccttcggcaacaccagcaccatgggccagccccaacaaaccagc
accatggggggtctgtttggggccacggcagcatcccaggcaggggggttgtttggaaat
accgctcagactgcaccagctacgggctttgggacaggcgccggactctttggacaaacc
agcaccgctttcggcaacatcggcacacagcagggcttgtttggtaataaaacggcaggg
tttggtgtcaccactaccagcgccccgtcgtttggcacgggcaccggcctcttcggcaac
aaacctgccctcactctcggaacagctaccaacacatccaactttggttttggacccact
gctgctggcggaagcctttttgggaacaagactgcagcaggaggactagggaccgggctg
ggagccagctttggagcagtaggcactggccagatgtctctgtttgggaataacaagacg
ctgggttccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaac
agcactctgggcttcggagcgccacaacagcccgttgcggtgacggaccctaacgcggtg
gcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcgga
gactcccccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaag
cccaccaatccagtggcccagaaggcgttgaccacgccaactcactacaaactgacaccg
cgacctgcgacacgtgtgcggcccaaagctctgacatcatcgggctcttccaagtcccag
ctgtttgatgggttggatgacgacgagccttctctcaccaacggagccttcatgcccagg
aagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagccca
ctcaacagagactccgacgacctgtcctctccaccagagtaccccctcaacggactcggt
gccagtgtggacgaggatgatgatgtgagggaggtggtggagggaggagccgaggacgac
ctggagatcaagttctacgccaagcccagcctgcaggacaccatctcagagctcaatgcc
cataggatgggggctgggggcaggaacgggctgcaggtgagcagcgaggacatatcgctg
ggagatgactccatacaggaggagcgagtggaggagggccccccccaccctgcaggtatc
gttctgggccgtgtgggctactacaccatccctgccatggaagagctggccaaaatggtg
gatgaaaacggggtgtgtgtggtggaaaacttcaccgtgggcagaaaaggttacggctcc
gtgttcttccatggtgaggtgaacgtgacggggctgaacctggatgagattgtccacttc
agacgtaaagaggtcatcgtctacctcgacgacaagaacaagccccctgagggggagggg
ctcaacaggcgagcagaggtgactctggatggggtgtggcctaatgataagaccacctgt
actcaaataaagagccctgagcgtctgtctgagattaactacgagggccgcttggagaac
gcctcacgcaaacagggcgcccgcttcctcgagtaccgctccgagactgggtcctgggtg
tttgaggtggctcatttctctaagtacggcctgcaggactctgacgaggataaggaagtc
cctctcaaagtggaccccaagaagctgaagacggcaacaagacttccaccagggctgcag
cagctgcctccctcccagcagcaggtggcgccacaggctcagtccacagcagtgctggag
ctgctgaatcgcgtattggaggtggacagtgatatggccgacattacccaggatgcccca
ggggagagcatgttgggggaggaggaaggggagagtggcataggggagaagggaagtcgg
ctggggaatgtgacccatacggaacacgactctgtctcagcgtccagtcagattgcctcc
tcgctggggatcaaccctcacacactacagattatgaaggcatcgctgtttgctgaggac
gatgatggtgacatgttccaggagcagggagggatgacaagttctctagacgtggcctct
cctcacatccacctgcctggcacgcagggcaggccctccatcggtggtctcctgcagact
cgtttcagcagtgccggtctcttctttcagctccctgacgtgccctttggtgggggcctt
cccggcaggctgtctcgggtgtcgccggcggtgcctgagccttcgcgggtctccccctgg
ccctctttttttttgccagccccaccggccgaggccactgtacggacagtaggggctcgg
cgcctggggggacctgtggacccagagaactcagtcacactggggaagggccgtcttctg
atggatgtggctttgttcacgggccggtcatttcgggtgggctggggtcctggctggact
ctggtccactgtggagacgggctaagtggggccggggacaaggagcaggaccacggagac
acaggagctacaggctttggattcctgcccaaacctgccaagagtagacgactgtcagac
agtccattcaaggtggtgatcgagcaggtggttggtctggagctgcgggacagtgaggag
agccaagcggtgtaccagcggcccctggagatcagcctgaagcacagcagcatcagtaca
gaggggccctgccccttcatccagccccagagcggtgtggccgccctgcacgagtacgca
gagtggattactgacctcaaccaggaggctggtgctggagatgcagtcctgggtcactgg
gctcaggtgtggactctgtgtgaggccctgtggggccgacggtgttcagcagtgcctggt
accagtggctacctgcagcagatggagaggagaaggagcttctcagcttggctgtcccac
agtgccacccagaggatcgagcaggaagtgggcctgaacaaggggggaggaaacgtggag
gccatctttagctacctgactggacaccggatcagtgatgcctgcaggctggctcagaag
agtggggaccaccgtctctccctgctgctgtcccaggcggtgggctctcagtacggccgg
gagctgctggcactgcagcttggagactggaacaggatgcagacagactctttcctgcct
gaggagaggctacggatctttgcccttctcgctgggaaacctgtgtggcagtctacagac
tgtgaggtgaatgtgtgttcagaactggactggaggcgttgtatggcggtccacctgtgg
tacatgctgcctcccaccgcctccattgctgaagccctggccaagtacgaggctgccttc
cagggctctgctgagggtcagaagtatgcctgcgccccccttcccccctacctcgaccaa
tcagaccagccggacatggaggaggaagagtctaaacggccgctttacgatatctgcttc
cacctgctcaaactctacagcgacaggcactacagcctgcagcagttgttggaccccctg
gcggtgacgtgggagtgtcttgactaccgtctgagctggcacctgtggtcggtcctgcag
gcgctgcactacacacacctcagccccgcccgacagggcctcatacacaccagctatgct
gcccagctggagagtgctggcctctgggacatggccatctacgtactgctgcacatacct
gacaacacgctgcgtgagttggcggtgagggagatgctgcagctgcactgccccctactg
gagacggaggagtctgccaagaaagagcactttctcacagagagactactgatcccagaa
cagtggctccaccaggccaaagctaccagagccagaagagacacagacagacacggagag
gcccttcacctgtacagagcaggacactggaacctctgccacagtctggtcatacagcac
cttgcctcaggtgtgcatgtaaacactcacgcgcgcgcacacacacccagacaacctcta
accctgttcccctgtctctgtgcaatttcccctgtagattgcatcattaatgataaccat
gagtacctcttggagttcctggaggggcttgcagttcctgagcgcagttctgtgatccag
gactgggacacggctggcagagtctacctggactacatcggagtcatacagaccctacac
gccatacaacagatggacagtactggttacgagctggagtgtctacacactgaggtgacg
tcactctgcagcaggatagagctcctcccttgctccaccgccaaggaccgcctcgcccaa
tcagagatggccaagtgtgtggctaatatcctgcgtgtggtgttgagtctgcagcagggt
ggtgagatccccttgtcccagcttgcgtccaacatcggccgtctgcccatgcccgaggac
tatgctctcgaggagctccgcagtctcacccaatcatatctgagacagctcattgtcagc
taa
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