Salvelinus namaycush (lake trout): 120057105
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Entry
120057105 CDS
T07522
Symbol
lrrc4cb
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120057105 (lrrc4cb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120057105 (lrrc4cb)
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
NGL family
120057105 (lrrc4cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_1
LRR_14
Ig_3
LRR_9
ig
V-set
Ig_2
Ig_6
LRRNT
Syndecan
Motif
Other DBs
NCBI-GeneID:
120057105
NCBI-ProteinID:
XP_038861453
UniProt:
A0A8U1BSY7
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Position
Sna1:complement(81927868..81929733)
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AA seq
621 aa
AA seq
DB search
MLITMISSLQRQTMRDPRLRGARSYPLFVLLLALQILAVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFQDLSNLRYLNLGMCNLKEIPNILPLVRLEELEMSGNQISVIGPGSF
AGLANLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHRLERVHLH
HNPWNCNCDILWLSWWLKETVPANTSCCARCHTPASYRGRYIGELEHSYFQCDVPVIVEP
PADRNVTEGMAAELKCRTSSLTSVSWLTPNGSLVTHGAYKVRLAVLNDGTLNFTTVTMQD
TGTYTCMVSNTAGNISASAVLNVTSVENSGVTYFTTVTVETTETVDDSQTPALPPIGWVS
SSTTRGPPVQTRTTERTYTVSVLDLDGEGDRGLEEVMKTTKIIIGCFVAITLMAAVLLVI
FYKMRKQNHQQDPDGPASSMEVITVEEELAGVAAMETHLHLPPLEHYNHYNTYRSTYHHS
HTQEPLLIQASSKDNVQETQI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcacaatgatctcctccctccagcgccagacaatgagagatcctaggctgagg
ggggctcggtcctatcccctctttgtgctgctgttggccctccagatcctggcggtggcc
ggcctggtgcgtgcccagacctgcccctctgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccgccggagcctgcgagatgtccccgacggcatctcaaccaacacacgt
tacctgaacctgcaggacaacctcatccaggtgatcaaggtggacagcttcaagcatcta
cggcacctggaaatcctgcagctgagcaagaaccacattcgcaacatcgagattggcgcc
ttcaacggcctggccagtctcaacaccctggagctgttcgacaaccgtctcaccaccatc
cccaatggggccttcgagtacctctccaagctcaaggagctgtggctgaggaacaacccc
attgagagcatcccatcgtacgccttcaaccgggtcccctcgctgcgaagactggacctg
ggagagctcaagcggctctcctacatctcagatggagccttccaggacctcagcaacctg
cgctacctgaacctgggcatgtgcaacctcaaggagatccccaacatcctacccttggtc
aggctggaggagctagagatgtcagggaaccagatctctgtcatagggcctggctctttc
gcagggctggcgaacttgcagaagttgtggatgatgcacgctcagatccagaccatcgag
aggaactcctttgacgacctccagtccctggtggagctcaacctggcccacaacaacctc
accctgttgccccatgacctcttcacccccctgcaccgcctggagagagtccatctgcac
cataacccctggaactgtaactgtgacatcctgtggcttagctggtggctgaaggagaca
gtgcctgccaacaccagctgctgtgcccgctgccacaccccagctagctacaggggtcgc
tacatcggcgagctagagcacagctacttccagtgcgatgtgcctgtcatcgtggagccg
ccggcggaccgcaacgtcacagagggcatggcggctgagctcaagtgcagaacgagctcg
ttgacctcggtaagctggctcacccccaacgggtctctggtgacccacggggcgtacaag
gtgcgcctggctgtcctcaacgacgggacgttgaacttcaccactgtcaccatgcaggac
acggggacttacacctgcatggtgagcaacacggcgggcaacatctccgcctctgccgtc
ctcaacgtcacctcggtggagaacagcggcgtcacctacttcaccacagtcaccgtggag
accacagagacagtagacgacagccagactcctgctcttccaccgattggctgggtatca
tcttcgaccaccagggggcctccggtccagaccaggaccacagagcggacctacaccgtc
tctgttctggacctggacggggagggggaccgcggcttggaggaggtgatgaagaccacc
aagatcatcatcggctgcttcgtggccatcacgctcatggccgccgtcttgctggttatt
ttctacaagatgaggaagcagaaccaccagcaggaccccgatggccccgcctcctccatg
gaggtcatcacagtggaggaggagctcgctggtgtcgctgccatggagacccacttacac
ctgcccccattggagcattacaaccattacaacacttacaggagcacctaccaccactcc
cacacacaggaacctttactgattcaagccagctccaaagacaatgtgcaagagacccaa
atttga
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