Salvelinus namaycush (lake trout): 120057175
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Entry
120057175 CDS
T07522
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057175
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
120057175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
120057175
NCBI-ProteinID:
XP_038861578
UniProt:
A0A8U1C396
LinkDB
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Position
Sna12:35448137..35464612
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AA seq
971 aa
AA seq
DB search
MVLELAVPANAGPLLHRSIPHIERIFRVRVSYGSAESSCDSANVSTSNIIIVRVAEGKED
DYTKAKDYIVSLTSPAHRKREHLTLAQHKQLVALKPVIEYDSQAVVEVREHVVDISGGER
NVMTAWSMVEKIKMEKHPCREEASELTEAQQPSGESEEGNSSESESEHQLQVNSGSCKRT
ELFSATKPHRQLCRSPCLDRPSFSQSSTLPELRPEDTKAAAVLKQASDQVYQTKMEFALK
LGYSGEQVETVLNKLGAAALINDILAELVRLGNKGELEVQASSNTGMLVSRGGPCVKEAV
SPEVSLEDDSVDPYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFVEKGHKDITVF
VPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDSDG
IIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVV
PEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRAFAKLSAVKTMSEGALAKCG
TGPATAKGESGSEAKRVTPKRQSDPSIRSVACEPEERLSAVRKPEANSVPSLVSALSVPT
MQPAKSHAAGALNTRSASSPVPGSLQFTHSSLEHMSSVQYPHPPILVTNSHGASVTYSEQ
FPKYDSVSTDHGYYSMLSDFSNMSMSSMHNVDSFCSMEHEHGVYLRNPSQHCPEPCLSHS
NSDSFSSYGELYMSSVDSSLDESMKAQQSPAQSRLQAFSHGGFHHEALTRVQSYGHEEPK
QGPCRKQSISHLAPHVQHPVVGARSSCPGDYPLPQNVLPSQSSQPGRSLGMTRMDSISDS
RLYESNPMRQRRPPLCREQHASWDPLPCGSESYGYHSYPLSNSLMQPCCERVMVRSMPDK
MEQIWRSPWENPPQAEHQERHVIPEHLYQTYRNLCNIFPAFVVHSVMEKNPHLTDPQQLA
AVIVTKLRSCH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagttggcagtgcccgcaaatgcaggccctttgcttcaccgctccatcccg
cacattgagcgtattttccgggtgagggtcagctacggatccgcggagtcaagctgcgac
agcgcaaatgtcagcaccagcaatatcataatagtacgtgtcgcggagggcaaggaagat
gactacaccaaggcaaaagattacatagtttccttaacttcgccagctcaccgaaagaga
gagcatctaacgttggctcaacacaaacagctggttgcgctgaagccagtcatcgagtat
gactctcaggctgtggtggaggtgagggagcatgtggtggacatctccggtggcgagagg
aacgtgatgacagcatggtcgatggtggagaagatcaaaatggagaaacacccttgcagg
gaagaggcctctgagctgactgaggcccagcagcccagtggggagtcggaggaggggaac
agctcagagagtgagtcagagcatcagctgcaagtgaacagcggcagctgtaagaggacg
gagctcttcagtgccaccaagcctcaccgccagctctgtcgctctccatgcctggaccgg
cccagcttctcccagagcagtactctaccagagctccgccctgaagacactaaggccgcc
gcagtcctcaaacaggccagtgaccaggtgtaccaaaccaagatggagtttgccttgaag
ctgggatactcaggtgaacaggtggagacagtgctgaacaagttaggggctgctgccctc
atcaatgatattctggctgagcttgtgaggcttggtaataaaggtgaactggaagttcaa
gcaagcagtaacacaggcatgttggtctcccgtggaggcccctgtgtcaaagaggctgtc
agtccggaggtgtcacttgaagatgattccgtggatccttatgataatctcaggcctatt
gtcattgatggatcgaatgtggcaatgagccatggaaacaaagaggttttctcttgcctt
ggtatccaattggctgttgattggtttgtggagaaagggcacaaagacatcacagtgttt
gttcctgcctggaggaaagagcagtcgagacctgacgcccctattacagaccaagacatt
ttgcggaagctggagaaagaaaagatcctagtgttcaccccatctagaagagtccagggg
aggagagtggtgtgctatgatgatcgctttatagtgaaactggcctgtgactctgatggc
ataattgtgtcaaatgacaactacagggatttacagaatgagaagccggagtggaagaag
ttcatagaggagcggctgctgatgtactcgtttgtcaatgataaattcatgccacctgat
gaccctttgggaagacacggtccaagtttagagaattttctccgcaagcgtcctgttgtc
ccagagcacaaaaagcaaccttgtccatatgggaaaaaatgcacttatggacataagtgc
aagtactaccatccagagcgtgcaaaccagccccaacggtcagtggctgatgaactgagg
gcgtttgccaagttgtctgctgtgaagacaatgagcgagggggccctggccaagtgcggc
actggacccgccacagctaagggggagagtggctctgaggctaaacgtgtgaccccgaag
cgccagtctgaccccagcatccgctcagtcgcctgcgagccagaggagagactgtccgct
gtccgtaagcctgaggcaaattctgttccttcccttgtgtctgccctcagcgtgcccacc
atgcagcctgcaaagagccatgcggctggtgccttgaacacacgatcagccagcagccca
gtacccggctccctccagttcacccacagctctctggagcacatgtctagtgtacagtac
ccacatccacccatcctagtcaccaacagccatggcgcttctgtcacttacagtgaacag
tttcctaagtacgattctgtgagcacggaccacggatactactctatgcttagtgatttt
tctaacatgagcatgagtagcatgcacaacgtggacagcttctgtagcatggagcatgag
cacggggtttatctgagaaatcccagccagcattgccctgagccctgcctcagccactct
aacagtgactccttttcctcttatggggaattatacatgagctcagtggacagtagcctg
gatgagagcatgaaggcacagcagtctcctgcacagagcagactccaggccttctcccat
gggggattccaccacgaggccctgacccgggtgcagagctatggccatgaggagcccaag
caaggtccatgcaggaagcagtccatatcccacctggcaccgcatgtccagcaccctgtt
gttggggcccggtccagctgcccaggggactaccccttacctcagaatgtcctcccgtcc
cagtcctcgcagccgggacgctccctgggcatgacacgtatggacagcatctcagactcc
aggctgtacgagagtaaccccatgaggcagcgcagacccccactgtgccgcgagcagcac
gccagctgggacccgctgccctgtggcagtgagtcctatggataccattcgtaccccctg
agtaacagcctgatgcagccgtgttgtgagcgggtgatggtccgcagcatgcctgacaag
atggagcagatctggaggtctccgtgggagaacccgcctcaagccgagcaccaggagcgc
catgtcatcccagagcacctgtaccaaacataccgcaacctctgcaacatcttccccgct
ttcgtggtgcactctgtcatggagaaaaaccctcatctgacggacccacaacaactcgct
gccgtcattgtcacgaagctgaggtcttgccattga
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