Salvelinus namaycush (lake trout): 120057242
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Entry
120057242 CDS
T07522
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120057242
03015 mRNA surveillance pathway
120057242
03008 Ribosome biogenesis in eukaryotes
120057242
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120057242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057242
03009 Ribosome biogenesis [BR:
snh03009
]
120057242
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120057242
mRNA cycle factors
Stress granule specific factors
120057242
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120057242
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
120057242
NCBI-ProteinID:
XP_038861712
UniProt:
A0A8U1BXT4
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Position
Sna12:41711217..41727811
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AA seq
634 aa
AA seq
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MSTADDSRYHNDHDDRVGGQTFRNRKGRGPFRAHMYIDQGPGAPGTRTRYRGGQKGGGGQ
GPRARFDDEDGDVAMTDSNSQDGSSQHRFNPYGRPNRRGEDRFDRGRRGGGGGGHRGRSN
NRGDGGGDGRNTWFKIFVPYGKKYDKDWLITALQNICSMPFTPVHYQVEGNRAQFYIDDS
TTANALLKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQA
LDLNNIRIDPDLVSQNIDVTLNRKNSMHAVIKIIEENIPELVCLNISNNKLFRLDDLSEL
VNKAPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISTVRERFP
RLLKLDGQDLPPPIVFDVEVTPAALPPCKASYFCSEEIKTPILAFLQQYYSVYDSGDRQP
LLDAYHDGATFSLSMFITMQNPSRCSLGDYHKDTRNLKKLKDPSTRFRLLKHTRLNVVAF
LNELPKTHHDTASLNVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFSRVFITVPAGGT
SLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWS
QKCLQDNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttaccacaacgatcatgatgacagagttggaggacaa
acgtttcgcaaccgcaaaggcaggggcccttttagggcccatatgtatattgaccagggg
ccaggagcaccagggacaagaacaagatatcgtggtggccaaaaaggcggtggcggccag
ggacccagagcgagattcgatgatgaggatggagacgtggcaatgacagacagcaactcc
caagatgggtcctcccaacacagatttaacccttacggaaggccgaatcgccgtggtgaa
gaccgctttgatcgtggccgcagaggtggcggtggaggaggtcacaggggtcgtagtaat
aacagaggggatggaggtggagatggccgcaatacctggttcaagatatttgtcccctat
ggaaagaaatatgacaaagactggctcataacagctctgcagaatatctgctccatgccc
ttcaccccagtacattaccaagtagagggcaaccgagcacagttctatattgacgattcc
accactgcgaatgccttgttaaaggtatcacggaagatcacagacaaagaaggctacaag
gtgactgtactgatgaatccctgtcctccaccctcctttcttcagtctgaactaaagcca
gctgatctggagcacctaaagcaatgcatggctaaacgctttgatggctctcaacaagcc
ctggacttgaacaacatccggatagacccagacctggtttcccagaacattgatgtgaca
ttgaacagaaagaactctatgcacgctgttataaagataattgaggagaacattccagag
cttgtttgtctgaacatcagcaacaacaagctgtttcggctggatgacctgtcagagctg
gtcaacaaggctccaaacttgaagacactcaatctttctcataatgagttaaagacagag
cgtgagctggataggatcaagggtcttaagctggtggagctatggctggagaggaatccc
ctttgtgactatttcaaggaccaggcttcttacataagcacggtgagagagaggttcccc
aggcttctcaaactggatggtcaggatctcccccctcctatagtctttgatgtggaggtg
actcctgctgctcttccaccctgcaaggccagctacttctgctcagaagagatcaagact
cccatcctcgccttcctacaacaatactacagtgtgtatgactccggggacagacaacct
ttgttagatgcctatcatgatggagcgaccttctccttgagcatgttcatcaccatgcag
aacccatccaggtgcagtctcggagattaccataaagacactcgcaacctgaaaaagctc
aaagatccatccacacgattccgcttactgaagcacactcgtctgaatgtggtggctttc
ctgaacgaacttcccaaaacgcaccatgacactgcatcgctaaatgtggacgtcaacacc
ttcaccaacacgttactgtcgttcacagtcactggagtgttcaaagaagttgaaggtaaa
tcccgagactctgtcagagctttctctcgggtgttcatcacagtgccggctggagggaca
agtctttgcatagtaaacgacgagctttttgtccgtaatgctacgactgaggagatccgg
cgtgcctttgttgcacccgcccccacaccatccagcagccctgtccccaccctctcagct
ccccagcaagagatgctttctgccttctctctaaagtccggcatgaacctggaatggtcc
cagaaatgcctgcaggacaatgagtgggatttcaaccgagcagggcaggtcttcacagac
ctcaaggctcatggaaagatcccagatgtcgctttcataaagtga
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