Salvelinus namaycush (lake trout): 120057348
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Entry
120057348 CDS
T07522
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120057348 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120057348 (cnot6a)
Enzymes [BR:
snh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120057348 (cnot6a)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120057348 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120057348 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
120057348
NCBI-ProteinID:
XP_038861858
UniProt:
A0A8U1BTJ7
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Position
Sna12:47100913..47113563
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AA seq
557 aa
AA seq
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MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEISGKVRSLSTSLWTLTHLTALHIGD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
KLQTLGLKGNPLAQEILNLYQEHDGTRKLLNYLLDNLAGTKRVNSEQPPPRSWIVMAEPD
RARTAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCNADIISLQEV
ETEQYYNYFLPELKDQGYEGFFSPKSRARTMSECDRKHVDGCAIFYRTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAALLEVRKEMMEQSVGKSLHGMEKQLLLVANAH
MHWDPAYSDVKVVQTVMFLSEVKNIVEKATRSLKLSSVSGETNAVPLVLCADLNSLPDSG
VVEYLSSGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSNGRITHSFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPTLNVLGVLGPLDPHWLHENNISGCPHPHIPSDHFSLFAQLEL
LLSYPSSVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagacccaaggcggatgtacacaataatgtccact
gaggaggcagccaatgggaagaagtcatactgggctgagctcgaaattagtggtaaagtg
aggagtctgagcacctcattatggacgttgactcacctcactgctcttcacatcggcgat
aactccctctctcgtatcccgcccgatattgccaaacttcaaaacctggtgtacctggac
ctctcatccaacaagatcaggagcctgcccgccgagcttggcaacatggtgtctctcagg
gaacttcttttaaacaataaccagttgcgggttctaccttttgagcttggaaagctgttt
aagttacaaacactggggttaaaaggaaacccacttgcacaagaaatattgaacctctac
caggagcatgatggcacgaggaaactgctcaactaccttctggacaatctggcaggaacc
aaacgagtcaactccgagcaacccccacccagatcatggattgtcatggccgagcctgac
cgggcacgaacagcagccttgttttctgtgatgtgctacaacgtgctgtgtgataagtat
gccacgcgccagctctacggctactgcccctcctgggcccttaactgggagtacaggaag
aagtccatcatgcaggagatcatgaattgcaacgctgacatcattagcctacaggaagtg
gaaacagagcagtactacaactacttcctaccggagctgaaggaccagggttacgagggc
tttttcagccccaagtcccgcgccaggaccatgtccgagtgtgaccgcaagcatgtggac
ggctgcgccatattttacagaaccgaaaagttcagcctggtgcagaaacacacggtggag
ttcaaccagctggctatggcgaactctgagggctcagaggccatgctcaacagagtcatg
accaaggacaacattggtgtggccgctcttctagaggtgcgcaaggagatgatggagcag
tctgtggggaagtctctgcacggcatggagaaacagctcctcctggtggccaacgcccac
atgcactgggacccggcgtactccgacgtcaaggtggtccagaccgtcatgttcctgtct
gaggtgaaaaacatagtggagaaggccacgcgcagcctcaagctctcctcagtctccggg
gagacaaatgccgtcccactcgtcctgtgtgctgacctcaactcactgcccgactctggt
gtggtggagtacctgagctcgggcggagtggacagcacccacaaggacttcaaggagctt
cgctacatcgacagcctgaccaacttcaactgcaacggcaagaatggcacgtccaacggc
aggatcacccacagcttcaagctgaagagtgcctacgaaaacggcctgatgccttacacc
aactacaccttcgacttcaagggcatcattgactacatcttctactctcagcctacgctc
aatgtgttgggggttttgggtcctctggatcctcactggctccatgagaacaatatcagc
ggctgtccccacccccacatcccctccgatcacttctccctgtttgcacaactggagctg
ctcctctcctacccgtcatcagtcaacggaatccacctgccagggcgcaggtag
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