Salvelinus namaycush (lake trout): 120057358
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Entry
120057358 CDS
T07522
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120057358
03036 Chromosome and associated proteins [BR:
snh03036
]
120057358
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120057358
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120057358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
MJ0788
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
120057358
NCBI-ProteinID:
XP_038861876
UniProt:
A0A8U1BQQ0
LinkDB
All DBs
Position
12:47737828..47798037
Genome browser
AA seq
1751 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQVFMDDEEEEEELNTEDQDEHGNLRGLIDDDVDE
EEAEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDRV
KLMDDDEDDEKDQIADEIFHGGDDDGEGELEEGETVDPPLRRHGERHDEEEEEEGEEESD
IDDFIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEED
QDEEGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVK
PAEDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTVAKIKEALNFMR
NQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQ
ISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAANK
KKKLRKIKEVNEDGEEEEVEVEEEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTP
EQFGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVR
HVLRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEEG
LLTIDICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYP
QMAKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQAEEEDDDLMDESQGKGIRVL
GVAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLTS
KKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQTD
FRDYPPLLRQAVSVARKIQDPMVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCEF
INRVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMCH
MGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAED
ANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYR
APNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQ
QDNFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGMT
VHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQR
TTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVD
VREEGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKKK
MEELLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMFP
TVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQ
MFSAIAAVTGQGQGQNANTTPAQWDSSQYGYTGGSSGGGGGNTSAYHVFATPQQPMSTPM
MTPSYSYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQRQGHSSSNSHHGHSSNTPSSSTSS
RGRMPQQPKSSGSMAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSIAG
DATPLLDEMDR
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggtgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgtggatgaa
gaagaagcggaagaaaagaagagcggaggagcgggtagcggcagcgactcagaggatgaa
gtcagacacaggcgcaagaaacgcaactatgatgactacctggatgatgatgacctggac
ctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgcgtg
aagctgatggatgatgatgaagatgacgaaaaggaccagatagcagatgagatcttccac
ggaggagacgacgacggagagggggagctggaggagggagagaccgtcgacccgcccctc
cgtcgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtcagat
attgacgactttattgtggacgacgatggccagcccatcacaaagaagagaggcaaaaag
ttctcaggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgacttt
gactttgcagagtttgatgccgacggagcatatgaccagggtgaggaagaggaggaggac
caggatgaagagggctgggaccggcccaagaagcagacgaagaggagagtggggaggaag
agcatcttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggac
aacgagatccgctccacagacatgccagagaggttccagctgcgctccatcccagtgaag
cctgctgaggataatgagttagaggaagaggcagagtggatctacagaaatgccttctca
acccccaccatctccatgcaggagagtacagactacctggacagagggaccaccacaaac
ttcagcaggaaaggccccagcaccgtcgctaagatcaaggaggccctcaacttcatgagg
aaccagcactttgaggttccgttcatcgcgttctacaggaaggagtacgtggaaccggag
ctcaacatcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccagctgaag
agcaggaagcagaacctgacacgactgttccggaggatgcagtcgcaccagtatgaacag
atctctgccgaccctgacaaacctctggctgatggcatcagacccctggacacggctgat
atggagagactgaaagacgtccagtccatagatgagctgagtgatgtgtacagccacttc
ctgctgtactacggcagagacatacccaagatgcaaaacacagccaaggccgccaataag
aagaagaagctgaggaagatcaaggaggttaacgaggacggtgaggaggaagaggtggag
gtggaggaggaggaagagcagaaggggccagacctgaagctggcatctcgtagagacatg
tacagcatctgtcagagcgcagggctcgacggcctggctaagaagtttggtctgaccccc
gagcagtttggggagaatctgagagacagctaccagcgccacgagacagagcagttccct
gccgagcctgtagagctggccaaagactacgtctgcagccagtttaacagtcccgaggcg
gtgttggaggggactcgttacatggtggccatgcagatttccagggagcctctggtcaga
cacgtcctcagacagaccttccaggagagagccaagatcaacatcaatcccaccaagaaa
ggaaagaaggatatggatgaggcccattttggctactccttcaagtacctgaaaaacaag
ccagtgaaggagctgaacggagaacagtttttaaagatgtgccaggctgaggaggagggc
cttctcaccattgacatctgcatcgacctcctaggggtcaaagggtttgcaggtgaccag
acgtactttgatgagatcaagcaattctattacagagatgagttcagccaccaggtgcag
gagtggaacagacagaggaccctggccatcgaacgctccctcacacagttcctctaccct
cagatggccaaggaactcaagaacaaactcatcgcagaggcgaaggacaacatcatcaag
tcgtgttgcaggaggctgtataactggttgaaggtggctccctacagaccagaccagcag
gcggaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtcctg
ggagtggcctttgcagacagcagagacacgccagtgttctgttctctgatcaacggagag
ggagaggtggtggacttcctccgtctgccttacttcctgaagaggaggaatgcatggagg
gaggacgagagggacaaaaagctccaggacattgagaacctgaagaagttcctgaccagt
aagaagcctcacgtggtggctgttgccggggagaatagagatgcccacatgataatggag
gacattaagaggacagtgagtgagttggagcaggagtcttctctacctgctgtgggagtg
gagctggtggacaacgaactggccatgctttacatgaacagcacgaaatctcagactgac
ttcagggactacccgccgctgctgcgtcaggccgtgtccgtagccaggaagatccaggat
cccatggtggagtacgctcaggtctgcagcacagacgaagacatcctctgcctcaaacta
caccctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgagttt
ataaaccgggtcaacgaggtgggggtggatgtgaacagggccatatctcacccctacaca
cagagcctggtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctcaag
atcctaaaacagaacaacactcgtttggagaacaggactcagctggtcaccatgtgtcac
atgggccccaaggtcttcatcaactgtgccggcttcatcaagatagacaccgcctcgctt
ggagacagtacggactcatacatcgaggttctggacgggtccagggtgcacccggagacg
tatgagtgggccaggaagatggcggttgacgctctggaatacgatgagtccgcggaggac
gccaacccagccggtgcgctagaggaaatcctggaaaacccagagcgactcaaagacctg
gacctggatgccttcgctgaggagctggagagacagggttatggtaacaagggcataacg
ctgtatgatatccgtgctgagttgagctgcaggtataaggacctgagagttccctacaga
gctcctaacacagaggaggtgtttaacctgctcaccaaggagacacctgagacgttctat
ataggtaagctgatcaccagtgtcgtgacaggcattgctcaccggcgcccacaaggggag
agttatgaccaggccatcaggaacgactctaccgggctgtggcagtgccccttctgtcaa
caggacaacttccctgaactcagcgaggtgtggaaccattttgacagtggatcgtgtcca
ggccaggccatcggtgtgaggtctcgaatggacaacggtgtccagggcttcatccccacc
aagttcctcagtgacaaggtggtcaagcatcctgaggagagggtcaaggtgggtatgaca
gtacactgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgtcgt
acgtctgacctgatggataagaacaacgagtggaagcttcctaaggacacctactacgac
tttgatgcagagacagaagacactaaggcagaggaggaactcaagaagaagcaacagaga
accacctatataaaacgtgtgatcgcccatccatcgtttcacaacatcaacttcaagcag
gctgagaagatgatggagtccatggaccagggagatgttgtaatcaggcccagcagcaag
ggagaaaaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtggat
gtgagagaggagggcaaggagaacgccttcagcctgggacacacactctggatctacaca
gaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcgttt
gctcgcgacctcctgggacataagtacttccaggactgtaacggaggggacaagaagaaa
atggaggagttgttgattaggtgtaaaaaggaaaagcctgcattcatcccttattttgtc
tcagcctgtaaagacctgccagggaagttcatactggggtaccaacctcgcggaaaacca
cgtgttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttcccc
acagttaacggactgttccgctggttcaaagaccacttccaggaaccggtaccaggcatc
acccccagcagtagtagtcgaacacggacacctgcctctgtcaacgctacaccagctaac
atcaacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatgacctctcag
atgttcagtgccatcgccgcggtgacagggcagggccagggccagaatgccaacaccacg
cccgcccagtgggactccagccaatacggttacaccgggggcagcagcgggggtggggga
ggcaacacctcagcctatcacgtatttgcaacgccccagcagccgatgtcgacgcccatg
atgacccccagctactcgtacaccacccccagccagcagaccatgggtacgccccagtac
ccctcctccacccccttgtcctcccacggacacacacagagcagccaaaggcagggccac
agcagcagcaacagtcaccatggacactcgtccaacacaccttcctcctccacctcttcc
agaggacgcatgccgcagcagcctaagtcgagcggcagcatggcggtggactgggccaag
atggcggagcagtggctccaggacaaggaggcggagaggaagaagcagaagacccccagg
atgaccccacggccttcccccagccccatgatcgagagcaccccaatgtccatcgctgga
gacgcaacaccccttctggacgagatggaccgatag
DBGET
integrated database retrieval system
